miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 43851 0.73 0.291543
Target:  5'- aCCCGgcGGuucgcgugcggccAGCCGCCCCC-GCCGGc -3'
miRNA:   3'- -GGGCuuCCu------------UCGGCGGGGGgUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 56148 0.73 0.294123
Target:  5'- cCCCGgcGGccccGGCgGCCCCCCGCgccuCGGGc -3'
miRNA:   3'- -GGGCuuCCu---UCGgCGGGGGGUG----GCCU- -5'
5324 5' -62.5 NC_001798.1 + 105749 0.73 0.294771
Target:  5'- gCCGggGGucccaagaacaccccAGCCGCCCCuccgcuguacgCCACCGGu -3'
miRNA:   3'- gGGCuuCCu--------------UCGGCGGGG-----------GGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 1563 0.73 0.30065
Target:  5'- gCCGGccGAGGCCG-CCCUCGCCGGu -3'
miRNA:   3'- gGGCUucCUUCGGCgGGGGGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 2557 0.73 0.30065
Target:  5'- gCCUGAGacccGGggGUCGCCCUCUcaccguGCCGGGg -3'
miRNA:   3'- -GGGCUU----CCuuCGGCGGGGGG------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 124759 0.72 0.307288
Target:  5'- cCCCGuGGGccgugcGCCGCCCCCCGacccuCUGGGg -3'
miRNA:   3'- -GGGCuUCCuu----CGGCGGGGGGU-----GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 26421 0.72 0.307288
Target:  5'- gCCGAAGcc-GUCGCCCCCCGCCcgcuuaugGGAu -3'
miRNA:   3'- gGGCUUCcuuCGGCGGGGGGUGG--------CCU- -5'
5324 5' -62.5 NC_001798.1 + 92906 0.72 0.314038
Target:  5'- cCCCGggGGAccggggaacgcgGGCCGCCggCCCAgcCCGGc -3'
miRNA:   3'- -GGGCuuCCU------------UCGGCGGg-GGGU--GGCCu -5'
5324 5' -62.5 NC_001798.1 + 77850 0.72 0.32717
Target:  5'- gCCCGcGGGGuggaccgaccuGGCCgaugccguccgggGCCCCCCcCCGGAa -3'
miRNA:   3'- -GGGCuUCCU-----------UCGG-------------CGGGGGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 147305 0.72 0.334957
Target:  5'- gCCC--AGGGAGCCuagaCCCCCACgGGAa -3'
miRNA:   3'- -GGGcuUCCUUCGGcg--GGGGGUGgCCU- -5'
5324 5' -62.5 NC_001798.1 + 129632 0.72 0.334957
Target:  5'- cCCCGAAGaaGAGCCgcgcggacGCCCCCCGCCc-- -3'
miRNA:   3'- -GGGCUUCc-UUCGG--------CGGGGGGUGGccu -5'
5324 5' -62.5 NC_001798.1 + 79190 0.72 0.342153
Target:  5'- gCCUGgcGGAcGUgGCCgCCCACCGGc -3'
miRNA:   3'- -GGGCuuCCUuCGgCGGgGGGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 131913 0.72 0.342153
Target:  5'- gCCGAcGGAccGCCGCCCaCCCcgaacCCGGAc -3'
miRNA:   3'- gGGCUuCCUu-CGGCGGG-GGGu----GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 78932 0.72 0.342153
Target:  5'- cCCCGAcgcacccGGAGCCGCUUCuCCAUCGGAu -3'
miRNA:   3'- -GGGCUuc-----CUUCGGCGGGG-GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 119942 0.72 0.349459
Target:  5'- gCCCGggGccccGggGCCcccGCgCUCCGCCGGGg -3'
miRNA:   3'- -GGGCuuC----CuuCGG---CGgGGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 56433 0.72 0.349459
Target:  5'- cUCCGAAGGucuguaCCGCUaCCCGCCGGGc -3'
miRNA:   3'- -GGGCUUCCuuc---GGCGGgGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 73444 0.71 0.364403
Target:  5'- uCCCG-AGGAccccGCUGCCCCCC-CCGc- -3'
miRNA:   3'- -GGGCuUCCUu---CGGCGGGGGGuGGCcu -5'
5324 5' -62.5 NC_001798.1 + 19698 0.71 0.372039
Target:  5'- cCUCGGAGGcggccGGCCGCCUCCUGCCcgccuuucgGGAa -3'
miRNA:   3'- -GGGCUUCCu----UCGGCGGGGGGUGG---------CCU- -5'
5324 5' -62.5 NC_001798.1 + 153241 0.71 0.379784
Target:  5'- gCCCGAGGcGGcggcccGGCCGUCCagCGCCGGGa -3'
miRNA:   3'- -GGGCUUC-CU------UCGGCGGGggGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 56000 0.71 0.379784
Target:  5'- gCCCGAGGcGAccCCGCCCCCCgacGCCa-- -3'
miRNA:   3'- -GGGCUUC-CUucGGCGGGGGG---UGGccu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.