miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 109345 0.71 0.386056
Target:  5'- gCCGGAGGGacccgcaccgcggGGCUuggagcgaccgagGCCCCCC-CCGGGc -3'
miRNA:   3'- gGGCUUCCU-------------UCGG-------------CGGGGGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 129494 0.71 0.395593
Target:  5'- aCCCGcAGGGcggcuggcGCCGCCagCCGCCGGGg -3'
miRNA:   3'- -GGGCuUCCUu-------CGGCGGggGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 152211 0.71 0.395593
Target:  5'- -gCGGggcGGGggGCgCGgCCCCCGCgGGAg -3'
miRNA:   3'- ggGCU---UCCuuCG-GCgGGGGGUGgCCU- -5'
5324 5' -62.5 NC_001798.1 + 130026 0.7 0.403655
Target:  5'- gCCCGcGGGcgcGGCCGCCCCgCCGCaCGc- -3'
miRNA:   3'- -GGGCuUCCu--UCGGCGGGG-GGUG-GCcu -5'
5324 5' -62.5 NC_001798.1 + 130943 0.7 0.403655
Target:  5'- gCCGuGGcccGggGCCgGCCCCCCGCCcccGGGg -3'
miRNA:   3'- gGGCuUC---CuuCGG-CGGGGGGUGG---CCU- -5'
5324 5' -62.5 NC_001798.1 + 4053 0.7 0.406909
Target:  5'- aCCCGcgcgccugcGCgCGCCCCCCGCCGGc -3'
miRNA:   3'- -GGGCuuccuu---CG-GCGGGGGGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 150858 0.7 0.40936
Target:  5'- cCCCGGgggcGGGggGCCggccccgggccacgGCUCCCCGCUGa- -3'
miRNA:   3'- -GGGCU----UCCuuCGG--------------CGGGGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 32905 0.7 0.40936
Target:  5'- cCCCGGAGGAgcAGCUcacgGCCCCgggaggcgacacggCCACCGcGGa -3'
miRNA:   3'- -GGGCUUCCU--UCGG----CGGGG--------------GGUGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 132498 0.7 0.41182
Target:  5'- gCgGAAgcGGAAGCCGCCCg-CGCCGGGc -3'
miRNA:   3'- gGgCUU--CCUUCGGCGGGggGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 39014 0.7 0.41182
Target:  5'- uCCCGGcGGcGAAGUC-CCCCCgGCCGGu -3'
miRNA:   3'- -GGGCU-UC-CUUCGGcGGGGGgUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 31993 0.7 0.41182
Target:  5'- cCUCGAGGGGA-CCGCCCCCgACgCGu- -3'
miRNA:   3'- -GGGCUUCCUUcGGCGGGGGgUG-GCcu -5'
5324 5' -62.5 NC_001798.1 + 48748 0.7 0.420087
Target:  5'- cCCUGGggagGGGggGUCGCUCUCUggugggGCCGGAu -3'
miRNA:   3'- -GGGCU----UCCuuCGGCGGGGGG------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 99738 0.7 0.428453
Target:  5'- gCCGgcGG-GGCCGCCCU--GCCGGGa -3'
miRNA:   3'- gGGCuuCCuUCGGCGGGGggUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 102820 0.7 0.428453
Target:  5'- gCCCGu-GGggGCCGCCgCCgUGCCGc- -3'
miRNA:   3'- -GGGCuuCCuuCGGCGG-GGgGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 2151 0.7 0.428453
Target:  5'- cCCCauuAGcaugcGCCGCCCCCCGCCGa- -3'
miRNA:   3'- -GGGcu-UCcuu--CGGCGGGGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 44459 0.7 0.434368
Target:  5'- cCUCGu-GGggGCCGUguuucugcgcuacaCCCCgGCCGGGg -3'
miRNA:   3'- -GGGCuuCCuuCGGCG--------------GGGGgUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 67879 0.7 0.436917
Target:  5'- aCCCGgcGGcGGUCGCgcuuuUCCgCCGCCGGGa -3'
miRNA:   3'- -GGGCuuCCuUCGGCG-----GGG-GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 100460 0.7 0.436917
Target:  5'- uCCUGGuucGggGCCGCCCUggCC-CCGGAc -3'
miRNA:   3'- -GGGCUuc-CuuCGGCGGGG--GGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 60344 0.7 0.436917
Target:  5'- uCUCGGAGGggGCggcuaucugCGCCCCCagccuaacgGCCGGc -3'
miRNA:   3'- -GGGCUUCCuuCG---------GCGGGGGg--------UGGCCu -5'
5324 5' -62.5 NC_001798.1 + 72760 0.7 0.436917
Target:  5'- gCCGAAGGAgcGGUCGUCCCCgggggcgaccgcCGCCGcGGc -3'
miRNA:   3'- gGGCUUCCU--UCGGCGGGGG------------GUGGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.