miRNA display CGI


Results 21 - 40 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 76421 0.66 0.660472
Target:  5'- aCCCGGAGGccaccgcgGAGCUGgUCCggACCGGGg -3'
miRNA:   3'- -GGGCUUCC--------UUCGGCgGGGggUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 30673 0.66 0.660472
Target:  5'- cCCCgGGAGGAGGCgGCgCCUgCGCCc-- -3'
miRNA:   3'- -GGG-CUUCCUUCGgCG-GGGgGUGGccu -5'
5324 5' -62.5 NC_001798.1 + 117512 0.66 0.659507
Target:  5'- gCCC-AGGGggGuuGuuuguggagaCCCCCCuguuucuACCGGAa -3'
miRNA:   3'- -GGGcUUCCuuCggC----------GGGGGG-------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 47109 0.66 0.654677
Target:  5'- gCCCGucGGguGUcgagacgcccuguugCGCCUCaCCGCCGGGa -3'
miRNA:   3'- -GGGCuuCCuuCG---------------GCGGGG-GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 104476 0.66 0.65081
Target:  5'- gCUGggGGAcGUggaGUCCCCCuccCCGGGa -3'
miRNA:   3'- gGGCuuCCUuCGg--CGGGGGGu--GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 43148 0.66 0.65081
Target:  5'- gCCCGgcGG-GGCgGCCUCCUGgagccCCGGGg -3'
miRNA:   3'- -GGGCuuCCuUCGgCGGGGGGU-----GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 126857 0.66 0.65081
Target:  5'- gCCGAGcccAGCCGCCCgCCaugucccgccGCCGGGg -3'
miRNA:   3'- gGGCUUccuUCGGCGGGgGG----------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 50448 0.66 0.65081
Target:  5'- gCCCGAGuccaauccGGAcGCC-CCCCgagcgauggccuCCGCCGGGa -3'
miRNA:   3'- -GGGCUU--------CCUuCGGcGGGG------------GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 8255 0.66 0.65081
Target:  5'- gCCGGGccGGGccGGCaaCGCCCCgCGCCGGc -3'
miRNA:   3'- gGGCUU--CCU--UCG--GCGGGGgGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 6504 0.66 0.65081
Target:  5'- cCCCGAuGGGAGUCuCCCCgCAgCCaGGGu -3'
miRNA:   3'- -GGGCUuCCUUCGGcGGGGgGU-GG-CCU- -5'
5324 5' -62.5 NC_001798.1 + 16585 0.66 0.65081
Target:  5'- cCCCGGGuccuGGggGCgCGaCCCgCgGCCGGu -3'
miRNA:   3'- -GGGCUU----CCuuCG-GC-GGGgGgUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 66754 0.66 0.641134
Target:  5'- uCCCGggGGGucGGCaugcgacggCGUCUCCCgggggcgcuugGCCGGGg -3'
miRNA:   3'- -GGGCuuCCU--UCG---------GCGGGGGG-----------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 4258 0.66 0.641134
Target:  5'- cCCCGAcgacuguGGcAGaCCuCCCCCC-CCGGGg -3'
miRNA:   3'- -GGGCUu------CCuUC-GGcGGGGGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 75778 0.66 0.641134
Target:  5'- gUCCGggGGGGcGCCuggaaGUCCCCCGagGGGu -3'
miRNA:   3'- -GGGCuuCCUU-CGG-----CGGGGGGUggCCU- -5'
5324 5' -62.5 NC_001798.1 + 17462 0.66 0.637262
Target:  5'- cCCCGGcgauggccuguuugAGGAuggcggcGGCCGUUCCCuCAUCGGc -3'
miRNA:   3'- -GGGCU--------------UCCU-------UCGGCGGGGG-GUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 63447 0.66 0.634357
Target:  5'- cCCCGGggguuguGGGGGgcaaaaaacccagacGCCGCCCgagCCGCCGGc -3'
miRNA:   3'- -GGGCU-------UCCUU---------------CGGCGGGg--GGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 42193 0.66 0.631452
Target:  5'- gCCCGcgcguAGGGuuguGGCCGgacggaggaacuCCCCCCACUguGGAu -3'
miRNA:   3'- -GGGCu----UCCU----UCGGC------------GGGGGGUGG--CCU- -5'
5324 5' -62.5 NC_001798.1 + 73499 0.66 0.631452
Target:  5'- cCCCGAcc---GCCGCCCgcgaCCCGCgGGAc -3'
miRNA:   3'- -GGGCUuccuuCGGCGGG----GGGUGgCCU- -5'
5324 5' -62.5 NC_001798.1 + 115067 0.66 0.631452
Target:  5'- cCCCGgcGGcgaccucGCCGCCCgCC-UCGGGg -3'
miRNA:   3'- -GGGCuuCCuu-----CGGCGGGgGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 58375 0.66 0.631452
Target:  5'- gCUGGAGGcucAGGCCGCCgccuuucucaCCCCGCUGu- -3'
miRNA:   3'- gGGCUUCC---UUCGGCGG----------GGGGUGGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.