miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 73499 0.66 0.631452
Target:  5'- cCCCGAcc---GCCGCCCgcgaCCCGCgGGAc -3'
miRNA:   3'- -GGGCUuccuuCGGCGGG----GGGUGgCCU- -5'
5324 5' -62.5 NC_001798.1 + 42193 0.66 0.631452
Target:  5'- gCCCGcgcguAGGGuuguGGCCGgacggaggaacuCCCCCCACUguGGAu -3'
miRNA:   3'- -GGGCu----UCCU----UCGGC------------GGGGGGUGG--CCU- -5'
5324 5' -62.5 NC_001798.1 + 19998 0.66 0.631452
Target:  5'- cCCCGgcGcuGGUCGCCCUCUuCCGGc -3'
miRNA:   3'- -GGGCuuCcuUCGGCGGGGGGuGGCCu -5'
5324 5' -62.5 NC_001798.1 + 125855 0.67 0.621771
Target:  5'- cUCCGAAGGucugcgcgAGGCCGCUCUCCGaaGaGAc -3'
miRNA:   3'- -GGGCUUCC--------UUCGGCGGGGGGUggC-CU- -5'
5324 5' -62.5 NC_001798.1 + 152309 0.67 0.621771
Target:  5'- cCCCGGcggcuGGcGgcGCCaGCCgCCCugCGGGu -3'
miRNA:   3'- -GGGCU-----UC-CuuCGG-CGGgGGGugGCCU- -5'
5324 5' -62.5 NC_001798.1 + 130061 0.67 0.621771
Target:  5'- gCCGGAGcccggcccGCCGCgCCCCCGcgcCCGGGn -3'
miRNA:   3'- gGGCUUCcuu-----CGGCG-GGGGGU---GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 83813 0.67 0.621771
Target:  5'- cCCCGAucGGGGcgcGGUgGUCCCgCCGCCGc- -3'
miRNA:   3'- -GGGCU--UCCU---UCGgCGGGG-GGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 32640 0.67 0.621771
Target:  5'- gCCCGgcGGggGgCGCUUUgCCAgCCGGGg -3'
miRNA:   3'- -GGGCuuCCuuCgGCGGGG-GGU-GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 132661 0.67 0.621771
Target:  5'- cCCCuuuGggGcGGAGCCGCCCgcggaCCAaCGGGg -3'
miRNA:   3'- -GGG---CuuC-CUUCGGCGGGg----GGUgGCCU- -5'
5324 5' -62.5 NC_001798.1 + 104034 0.67 0.612096
Target:  5'- gCCCGcgggucugcguGGGGAcgaGGCCcacCCCCCCACCcuuguuGGAg -3'
miRNA:   3'- -GGGC-----------UUCCU---UCGGc--GGGGGGUGG------CCU- -5'
5324 5' -62.5 NC_001798.1 + 57247 0.67 0.612096
Target:  5'- gCCGAggAGGAAGa-GCCCCgggCCGCCGcGGa -3'
miRNA:   3'- gGGCU--UCCUUCggCGGGG---GGUGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 127647 0.67 0.612096
Target:  5'- -aCGAAGGucagguGGCCcgagcCCCCCCGCaGGAg -3'
miRNA:   3'- ggGCUUCCu-----UCGGc----GGGGGGUGgCCU- -5'
5324 5' -62.5 NC_001798.1 + 123160 0.67 0.612096
Target:  5'- cCCCGcgcGGccGUCGCCCCgCGcguCCGGAg -3'
miRNA:   3'- -GGGCuu-CCuuCGGCGGGGgGU---GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 27663 0.67 0.612096
Target:  5'- uCCCGggGccAGUuuUGCCUCCaggaGCCGGAc -3'
miRNA:   3'- -GGGCuuCcuUCG--GCGGGGGg---UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 4773 0.67 0.612096
Target:  5'- gCCGAcGGggGCgcggCGCCCgCggaCGCCGGGg -3'
miRNA:   3'- gGGCUuCCuuCG----GCGGG-Gg--GUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 21400 0.67 0.611129
Target:  5'- cCCCGAGGacgugcuGGAGCUGCugaaCCCCCACUa-- -3'
miRNA:   3'- -GGGCUUC-------CUUCGGCG----GGGGGUGGccu -5'
5324 5' -62.5 NC_001798.1 + 130623 0.67 0.602435
Target:  5'- cUCCGGcagcguGGcgcGGGCCGUgCCCCACCuGGGg -3'
miRNA:   3'- -GGGCUu-----CC---UUCGGCGgGGGGUGG-CCU- -5'
5324 5' -62.5 NC_001798.1 + 125798 0.67 0.602435
Target:  5'- uCCgCGAGGGcccGgCGCCgCCCCGCCGc- -3'
miRNA:   3'- -GG-GCUUCCuu-CgGCGG-GGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 126405 0.67 0.602435
Target:  5'- gCCUGAGccugcgccGGcGGCgGCCCCCCGCguccccgcccgCGGAc -3'
miRNA:   3'- -GGGCUU--------CCuUCGgCGGGGGGUG-----------GCCU- -5'
5324 5' -62.5 NC_001798.1 + 144082 0.67 0.602435
Target:  5'- aCCCGucGGGGggGCCacaGCgCCaCCCACgaCGGGc -3'
miRNA:   3'- -GGGC--UUCCuuCGG---CG-GG-GGGUG--GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.