miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 125798 0.67 0.602435
Target:  5'- uCCgCGAGGGcccGgCGCCgCCCCGCCGc- -3'
miRNA:   3'- -GG-GCUUCCuu-CgGCGG-GGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 130623 0.67 0.602435
Target:  5'- cUCCGGcagcguGGcgcGGGCCGUgCCCCACCuGGGg -3'
miRNA:   3'- -GGGCUu-----CC---UUCGGCGgGGGGUGG-CCU- -5'
5324 5' -62.5 NC_001798.1 + 77295 0.67 0.602435
Target:  5'- gCCGGAGGGGgaccauGCCGCCCUCaucgauGCCGcGGc -3'
miRNA:   3'- gGGCUUCCUU------CGGCGGGGGg-----UGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 40701 0.67 0.60147
Target:  5'- cCCCcAAGGAacccaauGGCCGCUccugcccgcgaCCCC-CCGGGu -3'
miRNA:   3'- -GGGcUUCCU-------UCGGCGG-----------GGGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 150622 0.67 0.592794
Target:  5'- gCUCGGccGGGgcGCCGCCCCCggggcccuCGCgGGc -3'
miRNA:   3'- -GGGCU--UCCuuCGGCGGGGG--------GUGgCCu -5'
5324 5' -62.5 NC_001798.1 + 119872 0.67 0.592794
Target:  5'- gCCCGGcgccGGGcGGCUacccggGaCCCCCgGCCGGGa -3'
miRNA:   3'- -GGGCU----UCCuUCGG------C-GGGGGgUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 65490 0.67 0.592794
Target:  5'- aCCCGGAGGuggGGUCgaggacccggGCCCCCUgguacccaacguGCCGGc -3'
miRNA:   3'- -GGGCUUCCu--UCGG----------CGGGGGG------------UGGCCu -5'
5324 5' -62.5 NC_001798.1 + 33053 0.67 0.592794
Target:  5'- gCUGggGGccGCgGCuCCCgCCGCCGcGAc -3'
miRNA:   3'- gGGCuuCCuuCGgCG-GGG-GGUGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 79978 0.67 0.588944
Target:  5'- cCCCGGacgccgcggccucGGGuccaccgcacGCCGCCCcgcccccgcagacaCCCGCCGGGg -3'
miRNA:   3'- -GGGCU-------------UCCuu--------CGGCGGG--------------GGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 101561 0.67 0.587021
Target:  5'- cCCCGAGcggcgcaucuucgccGGguGuCUGCUCCCCAccCCGGAg -3'
miRNA:   3'- -GGGCUU---------------CCuuC-GGCGGGGGGU--GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 128333 0.67 0.583178
Target:  5'- gCCCGAcGGcga-CGCgCCCCCGCUGGu -3'
miRNA:   3'- -GGGCUuCCuucgGCG-GGGGGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 125720 0.67 0.583178
Target:  5'- gCCCGGAcuccgccccGGcgaCCGCCCCgCGCCGGc -3'
miRNA:   3'- -GGGCUU---------CCuucGGCGGGGgGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 4698 0.67 0.583178
Target:  5'- gCCCGgcGcGgcGCCGCccucuuggCCCCCACCcccuGGGg -3'
miRNA:   3'- -GGGCuuC-CuuCGGCG--------GGGGGUGG----CCU- -5'
5324 5' -62.5 NC_001798.1 + 131114 0.67 0.583178
Target:  5'- cCCCGcGGcGAccgcgGGCCGCCUggagCgCCGCCGGGc -3'
miRNA:   3'- -GGGCuUC-CU-----UCGGCGGG----G-GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 139615 0.67 0.5803
Target:  5'- cCUCGggGGGuucGCCGUCCCCgGCgcccucaaacuccuCGGGu -3'
miRNA:   3'- -GGGCuuCCUu--CGGCGGGGGgUG--------------GCCU- -5'
5324 5' -62.5 NC_001798.1 + 102709 0.67 0.574551
Target:  5'- gCCCGGggugcgcgcgcuccuGGGGcgcgacugucgcguGGCCGCCCgCUACgCGGGg -3'
miRNA:   3'- -GGGCU---------------UCCU--------------UCGGCGGGgGGUG-GCCU- -5'
5324 5' -62.5 NC_001798.1 + 39705 0.67 0.573594
Target:  5'- gCCUGGAcGAcgugGGCCGCCaCCUGCUGGAu -3'
miRNA:   3'- -GGGCUUcCU----UCGGCGGgGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 96650 0.67 0.573594
Target:  5'- cCCCGcAGGGucGCgGCCgCCCAgggcCCGGc -3'
miRNA:   3'- -GGGC-UUCCuuCGgCGGgGGGU----GGCCu -5'
5324 5' -62.5 NC_001798.1 + 84896 0.67 0.573594
Target:  5'- gCCGccGucGGCCGCCCCCCcCCa-- -3'
miRNA:   3'- gGGCuuCcuUCGGCGGGGGGuGGccu -5'
5324 5' -62.5 NC_001798.1 + 85305 0.67 0.573594
Target:  5'- gCCGuccuccuGGggGCCcuGUCCCCCaaaagcACCGGGc -3'
miRNA:   3'- gGGCuu-----CCuuCGG--CGGGGGG------UGGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.