miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 26421 0.72 0.307288
Target:  5'- gCCGAAGcc-GUCGCCCCCCGCCcgcuuaugGGAu -3'
miRNA:   3'- gGGCUUCcuuCGGCGGGGGGUGG--------CCU- -5'
5324 5' -62.5 NC_001798.1 + 26863 0.69 0.490516
Target:  5'- aCCGggGGccccggguucccauuGGCCccagaGCCCCCCACgUGGGc -3'
miRNA:   3'- gGGCuuCCu--------------UCGG-----CGGGGGGUG-GCCU- -5'
5324 5' -62.5 NC_001798.1 + 27663 0.67 0.612096
Target:  5'- uCCCGggGccAGUuuUGCCUCCaggaGCCGGAc -3'
miRNA:   3'- -GGGCuuCcuUCG--GCGGGGGg---UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 30673 0.66 0.660472
Target:  5'- cCCCgGGAGGAGGCgGCgCCUgCGCCc-- -3'
miRNA:   3'- -GGG-CUUCCUUCGgCG-GGGgGUGGccu -5'
5324 5' -62.5 NC_001798.1 + 30949 0.75 0.224293
Target:  5'- aCCu--GGAAGCUGCCuCCCCcCCGGAg -3'
miRNA:   3'- gGGcuuCCUUCGGCGG-GGGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 31344 0.77 0.169057
Target:  5'- gCCCcccGGGAGCCGCggCCCCGCCGGGu -3'
miRNA:   3'- -GGGcuuCCUUCGGCGg-GGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 31993 0.7 0.41182
Target:  5'- cCUCGAGGGGA-CCGCCCCCgACgCGu- -3'
miRNA:   3'- -GGGCUUCCUUcGGCGGGGGgUG-GCcu -5'
5324 5' -62.5 NC_001798.1 + 32640 0.67 0.621771
Target:  5'- gCCCGgcGGggGgCGCUUUgCCAgCCGGGg -3'
miRNA:   3'- -GGGCuuCCuuCgGCGGGG-GGU-GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 32905 0.7 0.40936
Target:  5'- cCCCGGAGGAgcAGCUcacgGCCCCgggaggcgacacggCCACCGcGGa -3'
miRNA:   3'- -GGGCUUCCU--UCGG----CGGGG--------------GGUGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 33053 0.67 0.592794
Target:  5'- gCUGggGGccGCgGCuCCCgCCGCCGcGAc -3'
miRNA:   3'- gGGCuuCCuuCGgCG-GGG-GGUGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 37226 0.67 0.573594
Target:  5'- aCCGGcuGGGGccGGCCcaGCCCCUC-CCGGu -3'
miRNA:   3'- gGGCU--UCCU--UCGG--CGGGGGGuGGCCu -5'
5324 5' -62.5 NC_001798.1 + 39014 0.7 0.41182
Target:  5'- uCCCGGcGGcGAAGUC-CCCCCgGCCGGu -3'
miRNA:   3'- -GGGCU-UC-CUUCGGcGGGGGgUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 39705 0.67 0.573594
Target:  5'- gCCUGGAcGAcgugGGCCGCCaCCUGCUGGAu -3'
miRNA:   3'- -GGGCUUcCU----UCGGCGGgGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 40701 0.67 0.60147
Target:  5'- cCCCcAAGGAacccaauGGCCGCUccugcccgcgaCCCC-CCGGGu -3'
miRNA:   3'- -GGGcUUCCU-------UCGGCGG-----------GGGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 42193 0.66 0.631452
Target:  5'- gCCCGcgcguAGGGuuguGGCCGgacggaggaacuCCCCCCACUguGGAu -3'
miRNA:   3'- -GGGCu----UCCU----UCGGC------------GGGGGGUGG--CCU- -5'
5324 5' -62.5 NC_001798.1 + 43148 0.66 0.65081
Target:  5'- gCCCGgcGG-GGCgGCCUCCUGgagccCCGGGg -3'
miRNA:   3'- -GGGCuuCCuUCGgCGGGGGGU-----GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 43594 0.68 0.517052
Target:  5'- gCCCGcgc---GUCGCUCCCCACCGGc -3'
miRNA:   3'- -GGGCuuccuuCGGCGGGGGGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 43851 0.73 0.291543
Target:  5'- aCCCGgcGGuucgcgugcggccAGCCGCCCCC-GCCGGc -3'
miRNA:   3'- -GGGCuuCCu------------UCGGCGGGGGgUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 44459 0.7 0.434368
Target:  5'- cCUCGu-GGggGCCGUguuucugcgcuacaCCCCgGCCGGGg -3'
miRNA:   3'- -GGGCuuCCuuCGGCG--------------GGGGgUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 46263 0.76 0.190423
Target:  5'- cCCCGAGGcGggGCCcacgucccGuCCCCCCGCCGaGGu -3'
miRNA:   3'- -GGGCUUC-CuuCGG--------C-GGGGGGUGGC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.