miRNA display CGI


Results 61 - 80 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 47109 0.66 0.654677
Target:  5'- gCCCGucGGguGUcgagacgcccuguugCGCCUCaCCGCCGGGa -3'
miRNA:   3'- -GGGCuuCCuuCG---------------GCGGGG-GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 47989 0.68 0.554543
Target:  5'- gCCCGcGGGGAuccggAGCUGCCCacgCUCugCGGGu -3'
miRNA:   3'- -GGGC-UUCCU-----UCGGCGGG---GGGugGCCU- -5'
5324 5' -62.5 NC_001798.1 + 48748 0.7 0.420087
Target:  5'- cCCUGGggagGGGggGUCGCUCUCUggugggGCCGGAu -3'
miRNA:   3'- -GGGCU----UCCuuCGGCGGGGGG------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 50162 0.66 0.670114
Target:  5'- uCUCG-GGGAAcGUCGCCCggggCCGCCGGu -3'
miRNA:   3'- -GGGCuUCCUU-CGGCGGGg---GGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 50448 0.66 0.65081
Target:  5'- gCCCGAGuccaauccGGAcGCC-CCCCgagcgauggccuCCGCCGGGa -3'
miRNA:   3'- -GGGCUU--------CCUuCGGcGGGG------------GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 56000 0.71 0.379784
Target:  5'- gCCCGAGGcGAccCCGCCCCCCgacGCCa-- -3'
miRNA:   3'- -GGGCUUC-CUucGGCGGGGGG---UGGccu -5'
5324 5' -62.5 NC_001798.1 + 56088 0.69 0.471701
Target:  5'- -aCGggGGucccgccucccGGCCGCCCCCCGuCCcGAg -3'
miRNA:   3'- ggGCuuCCu----------UCGGCGGGGGGU-GGcCU- -5'
5324 5' -62.5 NC_001798.1 + 56148 0.73 0.294123
Target:  5'- cCCCGgcGGccccGGCgGCCCCCCGCgccuCGGGc -3'
miRNA:   3'- -GGGCuuCCu---UCGgCGGGGGGUG----GCCU- -5'
5324 5' -62.5 NC_001798.1 + 56433 0.72 0.349459
Target:  5'- cUCCGAAGGucuguaCCGCUaCCCGCCGGGc -3'
miRNA:   3'- -GGGCUUCCuuc---GGCGGgGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 57247 0.67 0.612096
Target:  5'- gCCGAggAGGAAGa-GCCCCgggCCGCCGcGGa -3'
miRNA:   3'- gGGCU--UCCUUCggCGGGG---GGUGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 57712 0.76 0.181605
Target:  5'- gUCCGcGAGGAGGCCGaCgCCCUGCUGGAg -3'
miRNA:   3'- -GGGC-UUCCUUCGGC-GgGGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 58303 0.66 0.679729
Target:  5'- gCgCGAgGGGGAGCgGCUCCugggCCACCuGGAa -3'
miRNA:   3'- -GgGCU-UCCUUCGgCGGGG----GGUGG-CCU- -5'
5324 5' -62.5 NC_001798.1 + 58375 0.66 0.631452
Target:  5'- gCUGGAGGcucAGGCCGCCgccuuucucaCCCCGCUGu- -3'
miRNA:   3'- gGGCUUCC---UUCGGCGG----------GGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 58585 0.66 0.660472
Target:  5'- aCUCGccauGGcGGCCGCgCCCCCgGCCGcGGu -3'
miRNA:   3'- -GGGCuu--CCuUCGGCG-GGGGG-UGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 60344 0.7 0.436917
Target:  5'- uCUCGGAGGggGCggcuaucugCGCCCCCagccuaacgGCCGGc -3'
miRNA:   3'- -GGGCUUCCuuCG---------GCGGGGGg--------UGGCCu -5'
5324 5' -62.5 NC_001798.1 + 61726 0.7 0.436917
Target:  5'- aCCaCGAGGGcgcGGCC-CUCCCCGCCGa- -3'
miRNA:   3'- -GG-GCUUCCu--UCGGcGGGGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 62973 0.68 0.535683
Target:  5'- --aGAAGGGcGGCCacGCCCCCUGCCGa- -3'
miRNA:   3'- gggCUUCCU-UCGG--CGGGGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 63392 0.76 0.18465
Target:  5'- cCCCGggGGAagccgGGCCGCCCgCggcacaaaacaucgCCGCCGGu -3'
miRNA:   3'- -GGGCuuCCU-----UCGGCGGG-G--------------GGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 63447 0.66 0.634357
Target:  5'- cCCCGGggguuguGGGGGgcaaaaaacccagacGCCGCCCgagCCGCCGGc -3'
miRNA:   3'- -GGGCU-------UCCUU---------------CGGCGGGg--GGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 65490 0.67 0.592794
Target:  5'- aCCCGGAGGuggGGUCgaggacccggGCCCCCUgguacccaacguGCCGGc -3'
miRNA:   3'- -GGGCUUCCu--UCGG----------CGGGGGG------------UGGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.