miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 130026 0.7 0.403655
Target:  5'- gCCCGcGGGcgcGGCCGCCCCgCCGCaCGc- -3'
miRNA:   3'- -GGGCuUCCu--UCGGCGGGG-GGUG-GCcu -5'
5324 5' -62.5 NC_001798.1 + 129668 0.66 0.660472
Target:  5'- cCCCGGccAGGgcGCCGCCgggcggcgCCCCGCg--- -3'
miRNA:   3'- -GGGCU--UCCuuCGGCGG--------GGGGUGgccu -5'
5324 5' -62.5 NC_001798.1 + 129632 0.72 0.334957
Target:  5'- cCCCGAAGaaGAGCCgcgcggacGCCCCCCGCCc-- -3'
miRNA:   3'- -GGGCUUCc-UUCGG--------CGGGGGGUGGccu -5'
5324 5' -62.5 NC_001798.1 + 129586 0.74 0.234869
Target:  5'- uCCCGc-GGggGCCgcGCCCCCCGCCc-- -3'
miRNA:   3'- -GGGCuuCCuuCGG--CGGGGGGUGGccu -5'
5324 5' -62.5 NC_001798.1 + 129494 0.71 0.395593
Target:  5'- aCCCGcAGGGcggcuggcGCCGCCagCCGCCGGGg -3'
miRNA:   3'- -GGGCuUCCUu-------CGGCGGggGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 129143 0.73 0.275207
Target:  5'- gCCgCGccGGggGCgGgCCCCCC-CCGGAg -3'
miRNA:   3'- -GG-GCuuCCuuCGgC-GGGGGGuGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 128333 0.67 0.583178
Target:  5'- gCCCGAcGGcga-CGCgCCCCCGCUGGu -3'
miRNA:   3'- -GGGCUuCCuucgGCG-GGGGGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 127647 0.67 0.612096
Target:  5'- -aCGAAGGucagguGGCCcgagcCCCCCCGCaGGAg -3'
miRNA:   3'- ggGCUUCCu-----UCGGc----GGGGGGUGgCCU- -5'
5324 5' -62.5 NC_001798.1 + 126857 0.66 0.65081
Target:  5'- gCCGAGcccAGCCGCCCgCCaugucccgccGCCGGGg -3'
miRNA:   3'- gGGCUUccuUCGGCGGGgGG----------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 126536 0.66 0.673964
Target:  5'- gCCGGAGGccccgcacgccgcGCCugccgccgccuGCCCCCCGCCGc- -3'
miRNA:   3'- gGGCUUCCuu-----------CGG-----------CGGGGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 126405 0.67 0.602435
Target:  5'- gCCUGAGccugcgccGGcGGCgGCCCCCCGCguccccgcccgCGGAc -3'
miRNA:   3'- -GGGCUU--------CCuUCGgCGGGGGGUG-----------GCCU- -5'
5324 5' -62.5 NC_001798.1 + 125855 0.67 0.621771
Target:  5'- cUCCGAAGGucugcgcgAGGCCGCUCUCCGaaGaGAc -3'
miRNA:   3'- -GGGCUUCC--------UUCGGCGGGGGGUggC-CU- -5'
5324 5' -62.5 NC_001798.1 + 125798 0.67 0.602435
Target:  5'- uCCgCGAGGGcccGgCGCCgCCCCGCCGc- -3'
miRNA:   3'- -GG-GCUUCCuu-CgGCGG-GGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 125720 0.67 0.583178
Target:  5'- gCCCGGAcuccgccccGGcgaCCGCCCCgCGCCGGc -3'
miRNA:   3'- -GGGCUU---------CCuucGGCGGGGgGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 125370 0.68 0.534745
Target:  5'- cCCCGggGGcgggcaccacucaGGGCCGCgCCggcggggCGCCGGGg -3'
miRNA:   3'- -GGGCuuCC-------------UUCGGCGgGGg------GUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 125239 0.75 0.204353
Target:  5'- cCCCGAgaGGGggGgauucccucccuCCGCCCCC-GCCGGGg -3'
miRNA:   3'- -GGGCU--UCCuuC------------GGCGGGGGgUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 124759 0.72 0.307288
Target:  5'- cCCCGuGGGccgugcGCCGCCCCCCGacccuCUGGGg -3'
miRNA:   3'- -GGGCuUCCuu----CGGCGGGGGGU-----GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 124335 0.68 0.545087
Target:  5'- gCCUGAuGGAcgcGGCCacGCCCCCgGcCCGGc -3'
miRNA:   3'- -GGGCUuCCU---UCGG--CGGGGGgU-GGCCu -5'
5324 5' -62.5 NC_001798.1 + 123160 0.67 0.612096
Target:  5'- cCCCGcgcGGccGUCGCCCCgCGcguCCGGAg -3'
miRNA:   3'- -GGGCuu-CCuuCGGCGGGGgGU---GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 122900 0.75 0.22953
Target:  5'- cCCCGGu----GCCGCCCCCCACgccgCGGAg -3'
miRNA:   3'- -GGGCUuccuuCGGCGGGGGGUG----GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.