miRNA display CGI


Results 41 - 60 of 221 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5324 5' -62.5 NC_001798.1 + 126536 0.66 0.673964
Target:  5'- gCCGGAGGccccgcacgccgcGCCugccgccgccuGCCCCCCGCCGc- -3'
miRNA:   3'- gGGCUUCCuu-----------CGG-----------CGGGGGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 139381 0.66 0.676848
Target:  5'- --gGggGGAaucGGCCGUgggcgcggcggaggCgCCCACCGGAc -3'
miRNA:   3'- gggCuuCCU---UCGGCG--------------GgGGGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 58303 0.66 0.679729
Target:  5'- gCgCGAgGGGGAGCgGCUCCugggCCACCuGGAa -3'
miRNA:   3'- -GgGCU-UCCUUCGgCGGGG----GGUGG-CCU- -5'
5324 5' -62.5 NC_001798.1 + 121315 0.66 0.679729
Target:  5'- --gGggGGggGUCaGCCgCaCCACCGGc -3'
miRNA:   3'- gggCuuCCuuCGG-CGGgG-GGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 120618 0.66 0.679729
Target:  5'- gCCCGAcccgcGCCuGCCCCCC-CgGGAa -3'
miRNA:   3'- -GGGCUuccuuCGG-CGGGGGGuGgCCU- -5'
5324 5' -62.5 NC_001798.1 + 116250 0.66 0.660472
Target:  5'- cCCCGGAGucu-CCGCCCcaCCCGCCGc- -3'
miRNA:   3'- -GGGCUUCcuucGGCGGG--GGGUGGCcu -5'
5324 5' -62.5 NC_001798.1 + 129668 0.66 0.660472
Target:  5'- cCCCGGccAGGgcGCCGCCgggcggcgCCCCGCg--- -3'
miRNA:   3'- -GGGCU--UCCuuCGGCGG--------GGGGUGgccu -5'
5324 5' -62.5 NC_001798.1 + 126857 0.66 0.65081
Target:  5'- gCCGAGcccAGCCGCCCgCCaugucccgccGCCGGGg -3'
miRNA:   3'- gGGCUUccuUCGGCGGGgGG----------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 50448 0.66 0.65081
Target:  5'- gCCCGAGuccaauccGGAcGCC-CCCCgagcgauggccuCCGCCGGGa -3'
miRNA:   3'- -GGGCUU--------CCUuCGGcGGGG------------GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 8255 0.66 0.65081
Target:  5'- gCCGGGccGGGccGGCaaCGCCCCgCGCCGGc -3'
miRNA:   3'- gGGCUU--CCU--UCG--GCGGGGgGUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 6504 0.66 0.65081
Target:  5'- cCCCGAuGGGAGUCuCCCCgCAgCCaGGGu -3'
miRNA:   3'- -GGGCUuCCUUCGGcGGGGgGU-GG-CCU- -5'
5324 5' -62.5 NC_001798.1 + 16585 0.66 0.65081
Target:  5'- cCCCGGGuccuGGggGCgCGaCCCgCgGCCGGu -3'
miRNA:   3'- -GGGCUU----CCuuCG-GC-GGGgGgUGGCCu -5'
5324 5' -62.5 NC_001798.1 + 47109 0.66 0.654677
Target:  5'- gCCCGucGGguGUcgagacgcccuguugCGCCUCaCCGCCGGGa -3'
miRNA:   3'- -GGGCuuCCuuCG---------------GCGGGG-GGUGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 117512 0.66 0.659507
Target:  5'- gCCC-AGGGggGuuGuuuguggagaCCCCCCuguuucuACCGGAa -3'
miRNA:   3'- -GGGcUUCCuuCggC----------GGGGGG-------UGGCCU- -5'
5324 5' -62.5 NC_001798.1 + 122182 0.66 0.660472
Target:  5'- aCCUGcuGcGGGCCGCggCCCCCGCgUGGAg -3'
miRNA:   3'- -GGGCuuCcUUCGGCG--GGGGGUG-GCCU- -5'
5324 5' -62.5 NC_001798.1 + 73571 0.66 0.660472
Target:  5'- uCCUGAcgGGGGAGCUGUUCCCgGgacacCCGGu -3'
miRNA:   3'- -GGGCU--UCCUUCGGCGGGGGgU-----GGCCu -5'
5324 5' -62.5 NC_001798.1 + 58585 0.66 0.660472
Target:  5'- aCUCGccauGGcGGCCGCgCCCCCgGCCGcGGu -3'
miRNA:   3'- -GGGCuu--CCuUCGGCG-GGGGG-UGGC-CU- -5'
5324 5' -62.5 NC_001798.1 + 147268 0.66 0.660472
Target:  5'- aCCCGcGGGcuugccuAGCCcgguccccuacGCCCCCCucggcagcCCGGAc -3'
miRNA:   3'- -GGGCuUCCu------UCGG-----------CGGGGGGu-------GGCCU- -5'
5324 5' -62.5 NC_001798.1 + 136487 0.66 0.660472
Target:  5'- gCCCGggGGccAGGUaCGCauCCUCCGCgGGGg -3'
miRNA:   3'- -GGGCuuCC--UUCG-GCG--GGGGGUGgCCU- -5'
5324 5' -62.5 NC_001798.1 + 133979 0.66 0.660472
Target:  5'- uCCCGcGGGGAGCgacggCGCCCgCCGCguaGGu -3'
miRNA:   3'- -GGGCuUCCUUCG-----GCGGGgGGUGg--CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.