Results 41 - 60 of 295 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5325 | 5' | -66.3 | NC_001798.1 | + | 101959 | 0.66 | 0.462898 |
Target: 5'- -gGCGCCCGUGagcgggacggcagacCCCGCCuuCCUGCUCg- -3' miRNA: 3'- aaUGCGGGCAC---------------GGGUGG--GGGCGGGgc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 133963 | 0.66 | 0.46814 |
Target: 5'- -gGCGCCCGccGCgUAgguCUCCCGCCUCa -3' miRNA: 3'- aaUGCGGGCa-CGgGU---GGGGGCGGGGc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 100456 | 0.66 | 0.46814 |
Target: 5'- ---gGUUCGgGgCCGCCCUgGCCCCGg -3' miRNA: 3'- aaugCGGGCaCgGGUGGGGgCGGGGC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 126477 | 0.66 | 0.46814 |
Target: 5'- -aGCGCgggCCGcagcGCCCcCUUCCGCCCCa -3' miRNA: 3'- aaUGCG---GGCa---CGGGuGGGGGCGGGGc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 106862 | 0.66 | 0.46814 |
Target: 5'- -gGCGCUCGcacGCCCcUCCCCGCggaccCCCa -3' miRNA: 3'- aaUGCGGGCa--CGGGuGGGGGCG-----GGGc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 133429 | 0.66 | 0.459421 |
Target: 5'- ---gGCCCcccgGCCCcccgGCCCCCcgGCCCCc -3' miRNA: 3'- aaugCGGGca--CGGG----UGGGGG--CGGGGc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 138505 | 0.66 | 0.459421 |
Target: 5'- -gGgGCCgGgGCCC-UCCCCGCCCa- -3' miRNA: 3'- aaUgCGGgCaCGGGuGGGGGCGGGgc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 8144 | 0.66 | 0.442246 |
Target: 5'- -gGCGCCagcgGCCCACgccUCCCGCCgCa -3' miRNA: 3'- aaUGCGGgca-CGGGUG---GGGGCGGgGc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 139197 | 0.66 | 0.442246 |
Target: 5'- --gUGCCCG-GCCCcgggcguuGCCgCCGCCgCGg -3' miRNA: 3'- aauGCGGGCaCGGG--------UGGgGGCGGgGC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 124558 | 0.66 | 0.442246 |
Target: 5'- -cACGgCgCGgggGuCCCGCCUCaCGCCCCGc -3' miRNA: 3'- aaUGCgG-GCa--C-GGGUGGGG-GCGGGGC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 8102 | 0.66 | 0.442246 |
Target: 5'- -gGCaUCCGgcgGCCgGCCCCaCGCCCUu -3' miRNA: 3'- aaUGcGGGCa--CGGgUGGGG-GCGGGGc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 145143 | 0.66 | 0.448216 |
Target: 5'- -gACaGCCCGaggGCggccagcaacagggCCGCCCCCagcaccGCCCCGa -3' miRNA: 3'- aaUG-CGGGCa--CG--------------GGUGGGGG------CGGGGC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 124753 | 0.66 | 0.450788 |
Target: 5'- ---gGgCCGUGCgCCGcCCCCCGaCCCUc -3' miRNA: 3'- aaugCgGGCACG-GGU-GGGGGC-GGGGc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 62617 | 0.66 | 0.450788 |
Target: 5'- -cACGCgCG-GCCU-CCCCCGucugcCCCCGg -3' miRNA: 3'- aaUGCGgGCaCGGGuGGGGGC-----GGGGC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 44731 | 0.66 | 0.450788 |
Target: 5'- -aACGCCC-UGauCCgCGCCUUCGUCCCGg -3' miRNA: 3'- aaUGCGGGcAC--GG-GUGGGGGCGGGGC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 120324 | 0.66 | 0.450788 |
Target: 5'- --cCGCCCGccCCCcCCCCCucuCCCCGc -3' miRNA: 3'- aauGCGGGCacGGGuGGGGGc--GGGGC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 119287 | 0.66 | 0.450788 |
Target: 5'- -cGCgGCCCGUcuGCUgGCCCgCGgCCCGu -3' miRNA: 3'- aaUG-CGGGCA--CGGgUGGGgGCgGGGC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 7992 | 0.66 | 0.450788 |
Target: 5'- --cCGCCgGagaGCCCGagCCCCGCCCgCGu -3' miRNA: 3'- aauGCGGgCa--CGGGUg-GGGGCGGG-GC- -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 122688 | 0.66 | 0.454231 |
Target: 5'- -gGCGUCCGcgggcGCCgCGCCCCCGUcggcgucuccgucguCCCa -3' miRNA: 3'- aaUGCGGGCa----CGG-GUGGGGGCG---------------GGGc -5' |
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5325 | 5' | -66.3 | NC_001798.1 | + | 24999 | 0.66 | 0.458554 |
Target: 5'- -gAC-CCCGacgugGCCCGCCCUccugccacgcucaCGCCCCc -3' miRNA: 3'- aaUGcGGGCa----CGGGUGGGG-------------GCGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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