Results 61 - 80 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 32361 | 0.69 | 0.656393 |
Target: 5'- -cGGAGggcggccccgaGCCCGGGGCccGCGACCcgGCGc -3' miRNA: 3'- cuCCUC-----------UGGGCUCCGuaCGUUGG--CGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 46142 | 0.69 | 0.666535 |
Target: 5'- cAGGAGGCCCcuGGCAUugaGCGacgACCGCc -3' miRNA: 3'- cUCCUCUGGGcuCCGUA---CGU---UGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 96062 | 0.69 | 0.666535 |
Target: 5'- aGAGGGGAUgucaGGGGCccGCcGCCGCAu -3' miRNA: 3'- -CUCCUCUGgg--CUCCGuaCGuUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 77386 | 0.69 | 0.666535 |
Target: 5'- cGAGcucacGACCCuGGGGUcgGCGGCCGCc -3' miRNA: 3'- -CUCcu---CUGGG-CUCCGuaCGUUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 151615 | 0.7 | 0.555202 |
Target: 5'- gGGGGccGGGCCgGGGGCGUG--GCCGCGu -3' miRNA: 3'- -CUCC--UCUGGgCUCCGUACguUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 13408 | 0.7 | 0.575232 |
Target: 5'- uGGGGGGCCUccgauGGGGCAUGUAGgaGCAc -3' miRNA: 3'- cUCCUCUGGG-----CUCCGUACGUUggCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 83864 | 0.7 | 0.58531 |
Target: 5'- -uGGcGGGCCCGAGGCG-GCGACCc-- -3' miRNA: 3'- cuCC-UCUGGGCUCCGUaCGUUGGcgu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 14952 | 0.7 | 0.605559 |
Target: 5'- uGGGGugugGGGCCCGAGGCAUGUccuuaGCGg -3' miRNA: 3'- -CUCC----UCUGGGCUCCGUACGuugg-CGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 55 | 0.71 | 0.506139 |
Target: 5'- gGGGGGGGCgCGaAGGCggGCGGCgGCGg -3' miRNA: 3'- -CUCCUCUGgGC-UCCGuaCGUUGgCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 154393 | 0.71 | 0.506139 |
Target: 5'- gGGGGGGGCgCGaAGGCggGCGGCgGCGg -3' miRNA: 3'- -CUCCUCUGgGC-UCCGuaCGUUGgCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 2562 | 0.71 | 0.525564 |
Target: 5'- gGAGGGGcgGCCgCGGGGCGggggGCGuCCGCGc -3' miRNA: 3'- -CUCCUC--UGG-GCUCCGUa---CGUuGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 49772 | 0.71 | 0.525564 |
Target: 5'- cGGGGAGuuCCCgugGAGGCccgGCGACUGCGg -3' miRNA: 3'- -CUCCUCu-GGG---CUCCGua-CGUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 79249 | 0.71 | 0.543282 |
Target: 5'- uGGGGGGCCUGcuGGCGgaguucgacgcgGCGGCCGCGg -3' miRNA: 3'- cUCCUCUGGGCu-CCGUa-----------CGUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 46672 | 0.71 | 0.545263 |
Target: 5'- -cGuGGGGCCCGGGGCcgGauACCGCGg -3' miRNA: 3'- cuC-CUCUGGGCUCCGuaCguUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 35574 | 0.72 | 0.477602 |
Target: 5'- -cGGAG-CCCGcGGCGcugcucggcUGCGGCCGCGg -3' miRNA: 3'- cuCCUCuGGGCuCCGU---------ACGUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 48369 | 0.73 | 0.405739 |
Target: 5'- -cGGGGccGCCCcgcGGGGCGUGCcGCCGCGa -3' miRNA: 3'- cuCCUC--UGGG---CUCCGUACGuUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 23798 | 0.73 | 0.423072 |
Target: 5'- cGGGGAGccgugGCCCGGGGCcgGCcccCCGCc -3' miRNA: 3'- -CUCCUC-----UGGGCUCCGuaCGuu-GGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 14318 | 0.73 | 0.431903 |
Target: 5'- uGGGGGGugCgugggGAGGCGUGCggUCGCGu -3' miRNA: 3'- -CUCCUCugGg----CUCCGUACGuuGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 135793 | 0.74 | 0.370028 |
Target: 5'- gGAGGAGgccgugugcgcgGCCCGGGGCGucauggaggacgccUGUGACCGCu -3' miRNA: 3'- -CUCCUC------------UGGGCUCCGU--------------ACGUUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 123945 | 0.74 | 0.364422 |
Target: 5'- -cGGGGGCCUGGuGGCAccuccccgGCGGCCGCAu -3' miRNA: 3'- cuCCUCUGGGCU-CCGUa-------CGUUGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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