Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 5326 | 3' | -58.1 | NC_001798.1 | + | 123945 | 0.74 | 0.364422 |
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Target: 5'- -cGGGGGCCUGGuGGCAccuccccgGCGGCCGCAu -3' miRNA: 3'- cuCCUCUGGGCU-CCGUa-------CGUUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 149928 | 0.74 | 0.348729 |
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Target: 5'- gGAGGAGGag-GAGGCGgcgGCGACCGCGg -3' miRNA: 3'- -CUCCUCUgggCUCCGUa--CGUUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 39472 | 0.75 | 0.318812 |
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Target: 5'- aGGGGGGGCCUGGcGCGUGCcucguGGCCGCGg -3' miRNA: 3'- -CUCCUCUGGGCUcCGUACG-----UUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 27207 | 0.75 | 0.338035 |
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Target: 5'- cGGGGGAagccCCCGGGGCGgggcgcgggggagGCGGCCGCGg -3' miRNA: 3'- cUCCUCU----GGGCUCCGUa------------CGUUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 137485 | 0.75 | 0.341066 |
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Target: 5'- gGAGGGGGgCCGGGGCAg--AGCCGCGu -3' miRNA: 3'- -CUCCUCUgGGCUCCGUacgUUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 101971 | 0.77 | 0.235068 |
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Target: 5'- aGAGGAGGCCCcgggGGGGCGaugUGCGGCgGCGg -3' miRNA: 3'- -CUCCUCUGGG----CUCCGU---ACGUUGgCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 79535 | 0.78 | 0.203074 |
|
Target: 5'- -cGGAGACCCGGGGCcccUGguGCUGCGu -3' miRNA: 3'- cuCCUCUGGGCUCCGu--ACguUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 33584 | 0.89 | 0.041134 |
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Target: 5'- aGAGaAGACCCGAGGCAUGCAcCCGCAc -3' miRNA: 3'- -CUCcUCUGGGCUCCGUACGUuGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 33716 | 1.08 | 0.002002 |
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Target: 5'- aGAGGAGACCCGAGGCAUGCAACCGCAc -3' miRNA: 3'- -CUCCUCUGGGCUCCGUACGUUGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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