Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 33336 | 0.68 | 0.676648 |
Target: 5'- aGGGGGGCCCGAu-CGUGCAGagcaCGCAc -3' miRNA: 3'- cUCCUCUGGGCUccGUACGUUg---GCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 2493 | 0.68 | 0.686726 |
Target: 5'- cGGGucAGcGCCgCGGGGCGcgGCGGCCGCGg -3' miRNA: 3'- cUCC--UC-UGG-GCUCCGUa-CGUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 2219 | 0.68 | 0.696759 |
Target: 5'- cAGcGGGCCCGAGGCGcGCAGCgGg- -3' miRNA: 3'- cUCcUCUGGGCUCCGUaCGUUGgCgu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 86426 | 0.68 | 0.706739 |
Target: 5'- cGAGGcGGAcCCCGAGGC--GCAGCC-CGg -3' miRNA: 3'- -CUCC-UCU-GGGCUCCGuaCGUUGGcGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 126588 | 0.68 | 0.706739 |
Target: 5'- -uGGAGAucCCCGGGGCccGCAGCUuCGg -3' miRNA: 3'- cuCCUCU--GGGCUCCGuaCGUUGGcGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 149967 | 0.68 | 0.716656 |
Target: 5'- -cGGAGACgCCGAcgggGGCGcgGCGcCCGCGg -3' miRNA: 3'- cuCCUCUG-GGCU----CCGUa-CGUuGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 84052 | 0.68 | 0.696759 |
Target: 5'- cGAGcuGcACCCGGGGCAUGCGcACaaaGCAg -3' miRNA: 3'- -CUCcuC-UGGGCUCCGUACGU-UGg--CGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 105194 | 0.68 | 0.716656 |
Target: 5'- cGGcGGGGCCCGcGGUggGCGACgGCGc -3' miRNA: 3'- cUC-CUCUGGGCuCCGuaCGUUGgCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 18255 | 0.68 | 0.716656 |
Target: 5'- -cGGGGGCCCGggggccAGGUAcGCAuccuCCGCGg -3' miRNA: 3'- cuCCUCUGGGC------UCCGUaCGUu---GGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 146441 | 0.68 | 0.706739 |
Target: 5'- -cGGAGccCCCGGaGCccGCGGCCGCAg -3' miRNA: 3'- cuCCUCu-GGGCUcCGuaCGUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 147237 | 0.68 | 0.706739 |
Target: 5'- cGGGGGcCCCGGGGCcccgGGCCGCGc -3' miRNA: 3'- cUCCUCuGGGCUCCGuacgUUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 25808 | 0.67 | 0.749786 |
Target: 5'- -uGGAGuuCCUGGGGCugcuggccggcgccUGCGACCGCc -3' miRNA: 3'- cuCCUCu-GGGCUCCGu-------------ACGUUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 39770 | 0.67 | 0.768746 |
Target: 5'- cGGGGGGAagccgaccgccugguCCCGAGGC--GCGACCaCAc -3' miRNA: 3'- -CUCCUCU---------------GGGCUCCGuaCGUUGGcGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 27607 | 0.67 | 0.774343 |
Target: 5'- aAGGGGGCgCgCGGGGC-UGCccuGCCGCc -3' miRNA: 3'- cUCCUCUG-G-GCUCCGuACGu--UGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 121846 | 0.67 | 0.774343 |
Target: 5'- gGAGGAGcagcucacgGCCCcggGAGGCGacacgGCcACCGCGg -3' miRNA: 3'- -CUCCUC---------UGGG---CUCCGUa----CGuUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 70331 | 0.67 | 0.76499 |
Target: 5'- -cGGAGGCgCG-GGCGUGCuggcacCCGCu -3' miRNA: 3'- cuCCUCUGgGCuCCGUACGuu----GGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 116092 | 0.67 | 0.745943 |
Target: 5'- cGGGGGcGAccucCCCGAGGaGUGCAugGCCGUg -3' miRNA: 3'- -CUCCU-CU----GGGCUCCgUACGU--UGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 25242 | 0.67 | 0.75552 |
Target: 5'- cGAGGGccccGACCCGcaGGGCGgcugGC-GCCGCc -3' miRNA: 3'- -CUCCU----CUGGGC--UCCGUa---CGuUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 114272 | 0.67 | 0.75552 |
Target: 5'- -uGGAGcucgGCCUGuccguGGCGUGCGugUGCAc -3' miRNA: 3'- cuCCUC----UGGGCu----CCGUACGUugGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 28199 | 0.67 | 0.75552 |
Target: 5'- cGGGGGGaaggcGCCgGAGGCcccGCAcGCCGCGc -3' miRNA: 3'- -CUCCUC-----UGGgCUCCGua-CGU-UGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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