Results 61 - 80 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 25242 | 0.67 | 0.75552 |
Target: 5'- cGAGGGccccGACCCGcaGGGCGgcugGC-GCCGCc -3' miRNA: 3'- -CUCCU----CUGGGC--UCCGUa---CGuUGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 28199 | 0.67 | 0.75552 |
Target: 5'- cGGGGGGaaggcGCCgGAGGCcccGCAcGCCGCGc -3' miRNA: 3'- -CUCCUC-----UGGgCUCCGua-CGU-UGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 114272 | 0.67 | 0.75552 |
Target: 5'- -uGGAGcucgGCCUGuccguGGCGUGCGugUGCAc -3' miRNA: 3'- cuCCUC----UGGGCu----CCGUACGUugGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 70331 | 0.67 | 0.76499 |
Target: 5'- -cGGAGGCgCG-GGCGUGCuggcacCCGCu -3' miRNA: 3'- cuCCUCUGgGCuCCGUACGuu----GGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 24717 | 0.67 | 0.76499 |
Target: 5'- --cGGGGCCCGcGGGC--GCGGCCGCc -3' miRNA: 3'- cucCUCUGGGC-UCCGuaCGUUGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 39770 | 0.67 | 0.768746 |
Target: 5'- cGGGGGGAagccgaccgccugguCCCGAGGC--GCGACCaCAc -3' miRNA: 3'- -CUCCUCU---------------GGGCUCCGuaCGUUGGcGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 121846 | 0.67 | 0.774343 |
Target: 5'- gGAGGAGcagcucacgGCCCcggGAGGCGacacgGCcACCGCGg -3' miRNA: 3'- -CUCCUC---------UGGG---CUCCGUa----CGuUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 27607 | 0.67 | 0.774343 |
Target: 5'- aAGGGGGCgCgCGGGGC-UGCccuGCCGCc -3' miRNA: 3'- cUCCUCUG-G-GCUCCGuACGu--UGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 132114 | 0.67 | 0.774343 |
Target: 5'- --uGGGGCCCGAGGUccUGCAggcggcccugcGCCGCc -3' miRNA: 3'- cucCUCUGGGCUCCGu-ACGU-----------UGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 24826 | 0.66 | 0.78357 |
Target: 5'- -cGGGGACCUGcgcguGGCcgGCGGCaGCGa -3' miRNA: 3'- cuCCUCUGGGCu----CCGuaCGUUGgCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 41658 | 0.66 | 0.78357 |
Target: 5'- gGAGGgagcGGACCgCGAgcauGGCGUGC--CCGCAu -3' miRNA: 3'- -CUCC----UCUGG-GCU----CCGUACGuuGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 60949 | 0.66 | 0.78995 |
Target: 5'- cGAGGcgcgucgugucaccGGGCCCgGAGGC--GCGGCCGUu -3' miRNA: 3'- -CUCC--------------UCUGGG-CUCCGuaCGUUGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 31811 | 0.66 | 0.78995 |
Target: 5'- gGAGGgaGGACCCGGGGUcccccgcgGCAccaacacccccgguGCCGCc -3' miRNA: 3'- -CUCC--UCUGGGCUCCGua------CGU--------------UGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 34835 | 0.66 | 0.792663 |
Target: 5'- -cGGGGGCCCG-GGCcgG--ACCGCc -3' miRNA: 3'- cuCCUCUGGGCuCCGuaCguUGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 150199 | 0.66 | 0.792663 |
Target: 5'- uGGGGGGcggcACCgGGGGUGUuGguGCCGCGg -3' miRNA: 3'- -CUCCUC----UGGgCUCCGUA-CguUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 108702 | 0.66 | 0.796261 |
Target: 5'- -cGGGGACaCCGAGGCAUcCGACgacgaaccugagcauCGCGc -3' miRNA: 3'- cuCCUCUG-GGCUCCGUAcGUUG---------------GCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 130091 | 0.66 | 0.801613 |
Target: 5'- cGGGcacAGGCCCGGGGCGuUGCAcucgGgCGUAg -3' miRNA: 3'- cUCC---UCUGGGCUCCGU-ACGU----UgGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 99758 | 0.66 | 0.801613 |
Target: 5'- cGGGAuGCCCgcGAGGcCAU-CGACCGCAu -3' miRNA: 3'- cUCCUcUGGG--CUCC-GUAcGUUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 28776 | 0.66 | 0.801613 |
Target: 5'- gGAGGAGGag-GAGGCGgcgGCGGCgGCGc -3' miRNA: 3'- -CUCCUCUgggCUCCGUa--CGUUGgCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 109451 | 0.66 | 0.81905 |
Target: 5'- -uGGAGGCgCGccucGGGCAUcugGUGGCCGCGa -3' miRNA: 3'- cuCCUCUGgGC----UCCGUA---CGUUGGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home