miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 100745 0.69 0.615717
Target:  5'- uGGGGGACuuGGGGCGcGCGGuCgGCAa -3'
miRNA:   3'- cUCCUCUGggCUCCGUaCGUU-GgCGU- -5'
5326 3' -58.1 NC_001798.1 + 101911 0.66 0.81905
Target:  5'- gGAGcGGGACCgGGGGUAaccGCAACUGgGg -3'
miRNA:   3'- -CUC-CUCUGGgCUCCGUa--CGUUGGCgU- -5'
5326 3' -58.1 NC_001798.1 + 101971 0.77 0.235068
Target:  5'- aGAGGAGGCCCcgggGGGGCGaugUGCGGCgGCGg -3'
miRNA:   3'- -CUCCUCUGGG----CUCCGU---ACGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 103452 0.66 0.81905
Target:  5'- aGGGGGuucuCCgGAGGCAg--GGCCGCAc -3'
miRNA:   3'- cUCCUCu---GGgCUCCGUacgUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 105194 0.68 0.716656
Target:  5'- cGGcGGGGCCCGcGGUggGCGACgGCGc -3'
miRNA:   3'- cUC-CUCUGGGCuCCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 108702 0.66 0.796261
Target:  5'- -cGGGGACaCCGAGGCAUcCGACgacgaaccugagcauCGCGc -3'
miRNA:   3'- cuCCUCUG-GGCUCCGUAcGUUG---------------GCGU- -5'
5326 3' -58.1 NC_001798.1 + 109197 0.66 0.82752
Target:  5'- gGGGGAGgACCCG-GGCuccgGCAcggACgCGCGu -3'
miRNA:   3'- -CUCCUC-UGGGCuCCGua--CGU---UG-GCGU- -5'
5326 3' -58.1 NC_001798.1 + 109451 0.66 0.81905
Target:  5'- -uGGAGGCgCGccucGGGCAUcugGUGGCCGCGa -3'
miRNA:   3'- cuCCUCUGgGC----UCCGUA---CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 114272 0.67 0.75552
Target:  5'- -uGGAGcucgGCCUGuccguGGCGUGCGugUGCAc -3'
miRNA:   3'- cuCCUC----UGGGCu----CCGUACGUugGCGU- -5'
5326 3' -58.1 NC_001798.1 + 116092 0.67 0.745943
Target:  5'- cGGGGGcGAccucCCCGAGGaGUGCAugGCCGUg -3'
miRNA:   3'- -CUCCU-CU----GGGCUCCgUACGU--UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 121846 0.67 0.774343
Target:  5'- gGAGGAGcagcucacgGCCCcggGAGGCGacacgGCcACCGCGg -3'
miRNA:   3'- -CUCCUC---------UGGG---CUCCGUa----CGuUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 123945 0.74 0.364422
Target:  5'- -cGGGGGCCUGGuGGCAccuccccgGCGGCCGCAu -3'
miRNA:   3'- cuCCUCUGGGCU-CCGUa-------CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 126588 0.68 0.706739
Target:  5'- -uGGAGAucCCCGGGGCccGCAGCUuCGg -3'
miRNA:   3'- cuCCUCU--GGGCUCCGuaCGUUGGcGU- -5'
5326 3' -58.1 NC_001798.1 + 130091 0.66 0.801613
Target:  5'- cGGGcacAGGCCCGGGGCGuUGCAcucgGgCGUAg -3'
miRNA:   3'- cUCC---UCUGGGCUCCGU-ACGU----UgGCGU- -5'
5326 3' -58.1 NC_001798.1 + 132114 0.67 0.774343
Target:  5'- --uGGGGCCCGAGGUccUGCAggcggcccugcGCCGCc -3'
miRNA:   3'- cucCUCUGGGCUCCGu-ACGU-----------UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 134222 0.69 0.615717
Target:  5'- uGGGGGACCCGAcccuguggcgGGCGcUGUAugCGUg -3'
miRNA:   3'- cUCCUCUGGGCU----------CCGU-ACGUugGCGu -5'
5326 3' -58.1 NC_001798.1 + 135793 0.74 0.370028
Target:  5'- gGAGGAGgccgugugcgcgGCCCGGGGCGucauggaggacgccUGUGACCGCu -3'
miRNA:   3'- -CUCCUC------------UGGGCUCCGU--------------ACGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 136605 0.69 0.615717
Target:  5'- gGGGGAcgGGCCCG-GGCAacUGCAA-CGCAg -3'
miRNA:   3'- -CUCCU--CUGGGCuCCGU--ACGUUgGCGU- -5'
5326 3' -58.1 NC_001798.1 + 137485 0.75 0.341066
Target:  5'- gGAGGGGGgCCGGGGCAg--AGCCGCGu -3'
miRNA:   3'- -CUCCUCUgGGCUCCGUacgUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 146263 0.66 0.81905
Target:  5'- aAGGAGACCCaa-GCAccGCAGCCGgAg -3'
miRNA:   3'- cUCCUCUGGGcucCGUa-CGUUGGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.