Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5326 | 3' | -58.1 | NC_001798.1 | + | 146441 | 0.68 | 0.706739 |
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Target: 5'- -cGGAGccCCCGGaGCccGCGGCCGCAg -3' miRNA: 3'- cuCCUCu-GGGCUcCGuaCGUUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 147237 | 0.68 | 0.706739 |
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Target: 5'- cGGGGGcCCCGGGGCcccgGGCCGCGc -3' miRNA: 3'- cUCCUCuGGGCUCCGuacgUUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 147702 | 0.67 | 0.745943 |
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Target: 5'- aGGGGGGGuCCCagaaaGGGCAggcagGuCAGCCGCAc -3' miRNA: 3'- -CUCCUCU-GGGc----UCCGUa----C-GUUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 149928 | 0.74 | 0.348729 |
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Target: 5'- gGAGGAGGag-GAGGCGgcgGCGACCGCGg -3' miRNA: 3'- -CUCCUCUgggCUCCGUa--CGUUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 149967 | 0.68 | 0.716656 |
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Target: 5'- -cGGAGACgCCGAcgggGGCGcgGCGcCCGCGg -3' miRNA: 3'- cuCCUCUG-GGCU----CCGUa-CGUuGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 150199 | 0.66 | 0.792663 |
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Target: 5'- uGGGGGGcggcACCgGGGGUGUuGguGCCGCGg -3' miRNA: 3'- -CUCCUC----UGGgCUCCGUA-CguUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 150546 | 0.69 | 0.635044 |
|
Target: 5'- gGAGGAGacaaaggagagcgGCCCGGGGCccGCGggGCgGCGc -3' miRNA: 3'- -CUCCUC-------------UGGGCUCCGuaCGU--UGgCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 151615 | 0.7 | 0.555202 |
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Target: 5'- gGGGGccGGGCCgGGGGCGUG--GCCGCGu -3' miRNA: 3'- -CUCC--UCUGGgCUCCGUACguUGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 154393 | 0.71 | 0.506139 |
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Target: 5'- gGGGGGGGCgCGaAGGCggGCGGCgGCGg -3' miRNA: 3'- -CUCCUCUGgGC-UCCGuaCGUUGgCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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