Results 41 - 60 of 89 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 77386 | 0.69 | 0.666535 |
Target: 5'- cGAGcucacGACCCuGGGGUcgGCGGCCGCc -3' miRNA: 3'- -CUCcu---CUGGG-CUCCGuaCGUUGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 74028 | 0.67 | 0.726502 |
Target: 5'- -uGGAGuACCCGGcGGCGcgcgGCGGCCuGCGu -3' miRNA: 3'- cuCCUC-UGGGCU-CCGUa---CGUUGG-CGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 70331 | 0.67 | 0.76499 |
Target: 5'- -cGGAGGCgCG-GGCGUGCuggcacCCGCu -3' miRNA: 3'- cuCCUCUGgGCuCCGUACGuu----GGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 60949 | 0.66 | 0.78995 |
Target: 5'- cGAGGcgcgucgugucaccGGGCCCgGAGGC--GCGGCCGUu -3' miRNA: 3'- -CUCC--------------UCUGGG-CUCCGuaCGUUGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 49772 | 0.71 | 0.525564 |
Target: 5'- cGGGGAGuuCCCgugGAGGCccgGCGACUGCGg -3' miRNA: 3'- -CUCCUCu-GGG---CUCCGua-CGUUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 48369 | 0.73 | 0.405739 |
Target: 5'- -cGGGGccGCCCcgcGGGGCGUGCcGCCGCGa -3' miRNA: 3'- cuCCUC--UGGG---CUCCGUACGuUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 46672 | 0.71 | 0.545263 |
Target: 5'- -cGuGGGGCCCGGGGCcgGauACCGCGg -3' miRNA: 3'- cuC-CUCUGGGCUCCGuaCguUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 46142 | 0.69 | 0.666535 |
Target: 5'- cAGGAGGCCCcuGGCAUugaGCGacgACCGCc -3' miRNA: 3'- cUCCUCUGGGcuCCGUA---CGU---UGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 45998 | 0.66 | 0.82752 |
Target: 5'- gGGGGGGAUCCaggggaGGGCGUGgGuccCCGCGa -3' miRNA: 3'- -CUCCUCUGGGc-----UCCGUACgUu--GGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 43024 | 0.66 | 0.82752 |
Target: 5'- cGGGGGGAgcgcggggcCCCGGGcGCAaaUGCGGCgCGUg -3' miRNA: 3'- -CUCCUCU---------GGGCUC-CGU--ACGUUG-GCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 41658 | 0.66 | 0.78357 |
Target: 5'- gGAGGgagcGGACCgCGAgcauGGCGUGC--CCGCAu -3' miRNA: 3'- -CUCC----UCUGG-GCU----CCGUACGuuGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 39770 | 0.67 | 0.768746 |
Target: 5'- cGGGGGGAagccgaccgccugguCCCGAGGC--GCGACCaCAc -3' miRNA: 3'- -CUCCUCU---------------GGGCUCCGuaCGUUGGcGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 39472 | 0.75 | 0.318812 |
Target: 5'- aGGGGGGGCCUGGcGCGUGCcucguGGCCGCGg -3' miRNA: 3'- -CUCCUCUGGGCUcCGUACG-----UUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 36110 | 0.69 | 0.636061 |
Target: 5'- gGGGGGGGCCC--GGC-UGCGucucGCCGCGa -3' miRNA: 3'- -CUCCUCUGGGcuCCGuACGU----UGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 35574 | 0.72 | 0.477602 |
Target: 5'- -cGGAG-CCCGcGGCGcugcucggcUGCGGCCGCGg -3' miRNA: 3'- cuCCUCuGGGCuCCGU---------ACGUUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 35421 | 0.68 | 0.676648 |
Target: 5'- -cGGGGGCCUaaugcggcggGAGGCGUG-GGCCGCu -3' miRNA: 3'- cuCCUCUGGG----------CUCCGUACgUUGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 34835 | 0.66 | 0.792663 |
Target: 5'- -cGGGGGCCCG-GGCcgG--ACCGCc -3' miRNA: 3'- cuCCUCUGGGCuCCGuaCguUGGCGu -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 34734 | 0.67 | 0.726502 |
Target: 5'- cGAGGgucGGGCCCGGGaGCGggGCGGCC-CGg -3' miRNA: 3'- -CUCC---UCUGGGCUC-CGUa-CGUUGGcGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 33716 | 1.08 | 0.002002 |
Target: 5'- aGAGGAGACCCGAGGCAUGCAACCGCAc -3' miRNA: 3'- -CUCCUCUGGGCUCCGUACGUUGGCGU- -5' |
|||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 33584 | 0.89 | 0.041134 |
Target: 5'- aGAGaAGACCCGAGGCAUGCAcCCGCAc -3' miRNA: 3'- -CUCcUCUGGGCUCCGUACGUuGGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home