miRNA display CGI


Results 61 - 80 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5326 3' -58.1 NC_001798.1 + 33336 0.68 0.676648
Target:  5'- aGGGGGGCCCGAu-CGUGCAGagcaCGCAc -3'
miRNA:   3'- cUCCUCUGGGCUccGUACGUUg---GCGU- -5'
5326 3' -58.1 NC_001798.1 + 32361 0.69 0.656393
Target:  5'- -cGGAGggcggccccgaGCCCGGGGCccGCGACCcgGCGc -3'
miRNA:   3'- cuCCUC-----------UGGGCUCCGuaCGUUGG--CGU- -5'
5326 3' -58.1 NC_001798.1 + 31811 0.66 0.78995
Target:  5'- gGAGGgaGGACCCGGGGUcccccgcgGCAccaacacccccgguGCCGCc -3'
miRNA:   3'- -CUCC--UCUGGGCUCCGua------CGU--------------UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 29980 0.69 0.625887
Target:  5'- cGGGGGACCCccguGGGcCGUGC-GCCGCc -3'
miRNA:   3'- cUCCUCUGGGc---UCC-GUACGuUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 28776 0.66 0.801613
Target:  5'- gGAGGAGGag-GAGGCGgcgGCGGCgGCGc -3'
miRNA:   3'- -CUCCUCUgggCUCCGUa--CGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 28199 0.67 0.75552
Target:  5'- cGGGGGGaaggcGCCgGAGGCcccGCAcGCCGCGc -3'
miRNA:   3'- -CUCCUC-----UGGgCUCCGua-CGU-UGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 27607 0.67 0.774343
Target:  5'- aAGGGGGCgCgCGGGGC-UGCccuGCCGCc -3'
miRNA:   3'- cUCCUCUG-G-GCUCCGuACGu--UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 27207 0.75 0.338035
Target:  5'- cGGGGGAagccCCCGGGGCGgggcgcgggggagGCGGCCGCGg -3'
miRNA:   3'- cUCCUCU----GGGCUCCGUa------------CGUUGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 25808 0.67 0.749786
Target:  5'- -uGGAGuuCCUGGGGCugcuggccggcgccUGCGACCGCc -3'
miRNA:   3'- cuCCUCu-GGGCUCCGu-------------ACGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 25242 0.67 0.75552
Target:  5'- cGAGGGccccGACCCGcaGGGCGgcugGC-GCCGCc -3'
miRNA:   3'- -CUCCU----CUGGGC--UCCGUa---CGuUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 24826 0.66 0.78357
Target:  5'- -cGGGGACCUGcgcguGGCcgGCGGCaGCGa -3'
miRNA:   3'- cuCCUCUGGGCu----CCGuaCGUUGgCGU- -5'
5326 3' -58.1 NC_001798.1 + 24717 0.67 0.76499
Target:  5'- --cGGGGCCCGcGGGC--GCGGCCGCc -3'
miRNA:   3'- cucCUCUGGGC-UCCGuaCGUUGGCGu -5'
5326 3' -58.1 NC_001798.1 + 23880 0.69 0.625887
Target:  5'- uGGGGGGcGCCCGAGGCGgaGgAGgCGCGg -3'
miRNA:   3'- -CUCCUC-UGGGCUCCGUa-CgUUgGCGU- -5'
5326 3' -58.1 NC_001798.1 + 23798 0.73 0.423072
Target:  5'- cGGGGAGccgugGCCCGGGGCcgGCcccCCGCc -3'
miRNA:   3'- -CUCCUC-----UGGGCUCCGuaCGuu-GGCGu -5'
5326 3' -58.1 NC_001798.1 + 18255 0.68 0.716656
Target:  5'- -cGGGGGCCCGggggccAGGUAcGCAuccuCCGCGg -3'
miRNA:   3'- cuCCUCUGGGC------UCCGUaCGUu---GGCGU- -5'
5326 3' -58.1 NC_001798.1 + 16184 0.67 0.726502
Target:  5'- -cGGGGACCgGGGGgAcGCAcggGCCGCc -3'
miRNA:   3'- cuCCUCUGGgCUCCgUaCGU---UGGCGu -5'
5326 3' -58.1 NC_001798.1 + 14952 0.7 0.605559
Target:  5'- uGGGGugugGGGCCCGAGGCAUGUccuuaGCGg -3'
miRNA:   3'- -CUCC----UCUGGGCUCCGUACGuugg-CGU- -5'
5326 3' -58.1 NC_001798.1 + 14318 0.73 0.431903
Target:  5'- uGGGGGGugCgugggGAGGCGUGCggUCGCGu -3'
miRNA:   3'- -CUCCUCugGg----CUCCGUACGuuGGCGU- -5'
5326 3' -58.1 NC_001798.1 + 13408 0.7 0.575232
Target:  5'- uGGGGGGCCUccgauGGGGCAUGUAGgaGCAc -3'
miRNA:   3'- cUCCUCUGGG-----CUCCGUACGUUggCGU- -5'
5326 3' -58.1 NC_001798.1 + 12904 0.66 0.81905
Target:  5'- -cGGGGGCuuGGGGCcGUGCcACCcgGCGa -3'
miRNA:   3'- cuCCUCUGggCUCCG-UACGuUGG--CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.