Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5326 | 3' | -58.1 | NC_001798.1 | + | 146263 | 0.66 | 0.81905 |
Target: 5'- aAGGAGACCCaa-GCAccGCAGCCGgAg -3' miRNA: 3'- cUCCUCUGGGcucCGUa-CGUUGGCgU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 97612 | 0.66 | 0.822459 |
Target: 5'- -cGGAGAgCUGGGGCGacaucgcgacgcggGCcGCCGCGg -3' miRNA: 3'- cuCCUCUgGGCUCCGUa-------------CGuUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 45998 | 0.66 | 0.82752 |
Target: 5'- gGGGGGGAUCCaggggaGGGCGUGgGuccCCGCGa -3' miRNA: 3'- -CUCCUCUGGGc-----UCCGUACgUu--GGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 43024 | 0.66 | 0.82752 |
Target: 5'- cGGGGGGAgcgcggggcCCCGGGcGCAaaUGCGGCgCGUg -3' miRNA: 3'- -CUCCUCU---------GGGCUC-CGU--ACGUUG-GCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 87154 | 0.66 | 0.82752 |
Target: 5'- -uGGGGAUCgGGGGC-UGCugccCCGCGu -3' miRNA: 3'- cuCCUCUGGgCUCCGuACGuu--GGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 150199 | 0.66 | 0.792663 |
Target: 5'- uGGGGGGcggcACCgGGGGUGUuGguGCCGCGg -3' miRNA: 3'- -CUCCUC----UGGgCUCCGUA-CguUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 34835 | 0.66 | 0.792663 |
Target: 5'- -cGGGGGCCCG-GGCcgG--ACCGCc -3' miRNA: 3'- cuCCUCUGGGCuCCGuaCguUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 25242 | 0.67 | 0.75552 |
Target: 5'- cGAGGGccccGACCCGcaGGGCGgcugGC-GCCGCc -3' miRNA: 3'- -CUCCU----CUGGGC--UCCGUa---CGuUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 28199 | 0.67 | 0.75552 |
Target: 5'- cGGGGGGaaggcGCCgGAGGCcccGCAcGCCGCGc -3' miRNA: 3'- -CUCCUC-----UGGgCUCCGua-CGU-UGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 114272 | 0.67 | 0.75552 |
Target: 5'- -uGGAGcucgGCCUGuccguGGCGUGCGugUGCAc -3' miRNA: 3'- cuCCUC----UGGGCu----CCGUACGUugGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 24717 | 0.67 | 0.76499 |
Target: 5'- --cGGGGCCCGcGGGC--GCGGCCGCc -3' miRNA: 3'- cucCUCUGGGC-UCCGuaCGUUGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 70331 | 0.67 | 0.76499 |
Target: 5'- -cGGAGGCgCG-GGCGUGCuggcacCCGCu -3' miRNA: 3'- cuCCUCUGgGCuCCGUACGuu----GGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 39770 | 0.67 | 0.768746 |
Target: 5'- cGGGGGGAagccgaccgccugguCCCGAGGC--GCGACCaCAc -3' miRNA: 3'- -CUCCUCU---------------GGGCUCCGuaCGUUGGcGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 121846 | 0.67 | 0.774343 |
Target: 5'- gGAGGAGcagcucacgGCCCcggGAGGCGacacgGCcACCGCGg -3' miRNA: 3'- -CUCCUC---------UGGG---CUCCGUa----CGuUGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 27607 | 0.67 | 0.774343 |
Target: 5'- aAGGGGGCgCgCGGGGC-UGCccuGCCGCc -3' miRNA: 3'- cUCCUCUG-G-GCUCCGuACGu--UGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 132114 | 0.67 | 0.774343 |
Target: 5'- --uGGGGCCCGAGGUccUGCAggcggcccugcGCCGCc -3' miRNA: 3'- cucCUCUGGGCUCCGu-ACGU-----------UGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 24826 | 0.66 | 0.78357 |
Target: 5'- -cGGGGACCUGcgcguGGCcgGCGGCaGCGa -3' miRNA: 3'- cuCCUCUGGGCu----CCGuaCGUUGgCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 41658 | 0.66 | 0.78357 |
Target: 5'- gGAGGgagcGGACCgCGAgcauGGCGUGC--CCGCAu -3' miRNA: 3'- -CUCC----UCUGG-GCU----CCGUACGuuGGCGU- -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 31811 | 0.66 | 0.78995 |
Target: 5'- gGAGGgaGGACCCGGGGUcccccgcgGCAccaacacccccgguGCCGCc -3' miRNA: 3'- -CUCC--UCUGGGCUCCGua------CGU--------------UGGCGu -5' |
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5326 | 3' | -58.1 | NC_001798.1 | + | 60949 | 0.66 | 0.78995 |
Target: 5'- cGAGGcgcgucgugucaccGGGCCCgGAGGC--GCGGCCGUu -3' miRNA: 3'- -CUCC--------------UCUGGG-CUCCGuaCGUUGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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