Results 81 - 89 of 89 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 5326 | 3' | -58.1 | NC_001798.1 | + | 70331 | 0.67 | 0.76499 |
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Target: 5'- -cGGAGGCgCG-GGCGUGCuggcacCCGCu -3' miRNA: 3'- cuCCUCUGgGCuCCGUACGuu----GGCGu -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 24717 | 0.67 | 0.76499 |
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Target: 5'- --cGGGGCCCGcGGGC--GCGGCCGCc -3' miRNA: 3'- cucCUCUGGGC-UCCGuaCGUUGGCGu -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 114272 | 0.67 | 0.75552 |
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Target: 5'- -uGGAGcucgGCCUGuccguGGCGUGCGugUGCAc -3' miRNA: 3'- cuCCUC----UGGGCu----CCGUACGUugGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 28199 | 0.67 | 0.75552 |
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Target: 5'- cGGGGGGaaggcGCCgGAGGCcccGCAcGCCGCGc -3' miRNA: 3'- -CUCCUC-----UGGgCUCCGua-CGU-UGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 25242 | 0.67 | 0.75552 |
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Target: 5'- cGAGGGccccGACCCGcaGGGCGgcugGC-GCCGCc -3' miRNA: 3'- -CUCCU----CUGGGC--UCCGUa---CGuUGGCGu -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 25808 | 0.67 | 0.749786 |
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Target: 5'- -uGGAGuuCCUGGGGCugcuggccggcgccUGCGACCGCc -3' miRNA: 3'- cuCCUCu-GGGCUCCGu-------------ACGUUGGCGu -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 116092 | 0.67 | 0.745943 |
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Target: 5'- cGGGGGcGAccucCCCGAGGaGUGCAugGCCGUg -3' miRNA: 3'- -CUCCU-CU----GGGCUCCgUACGU--UGGCGu -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 10615 | 0.67 | 0.745943 |
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Target: 5'- cGAGcGGuuCCGGGGCGcgcaUGCAcGCCGCAu -3' miRNA: 3'- -CUCcUCugGGCUCCGU----ACGU-UGGCGU- -5' |
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| 5326 | 3' | -58.1 | NC_001798.1 | + | 126588 | 0.68 | 0.706739 |
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Target: 5'- -uGGAGAucCCCGGGGCccGCAGCUuCGg -3' miRNA: 3'- cuCCUCU--GGGCUCCGuaCGUUGGcGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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