Results 141 - 160 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 3' | -60.9 | NC_001798.1 | + | 75985 | 0.68 | 0.589318 |
Target: 5'- cCGuGCCCGCCgccccgggcgccgGCGGCAgGGCCCcguGCCc -3' miRNA: 3'- uGC-CGGGUGG-------------UGUUGUgCCGGG---UGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 85408 | 0.68 | 0.590306 |
Target: 5'- cUGGUCUGCCGCAccaucgagcuguACAagcaGGCCUACCGc -3' miRNA: 3'- uGCCGGGUGGUGU------------UGUg---CCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 26550 | 0.68 | 0.590306 |
Target: 5'- -gGGaCCGCCGCGGgGCuGGCCaCGCCGc -3' miRNA: 3'- ugCCgGGUGGUGUUgUG-CCGG-GUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 54429 | 0.68 | 0.590306 |
Target: 5'- aACGGaCCCGgCGCGACaACGcaccCCCGCCGc -3' miRNA: 3'- -UGCC-GGGUgGUGUUG-UGCc---GGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 73344 | 0.68 | 0.590306 |
Target: 5'- gACGcGCCCggcggGCCGCGAgACGGUCCcuugGCCc -3' miRNA: 3'- -UGC-CGGG-----UGGUGUUgUGCCGGG----UGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 95561 | 0.68 | 0.590306 |
Target: 5'- cGCGGCCCuggagguggcCCACGAgGCggaGGCCCuggucaGCCAg -3' miRNA: 3'- -UGCCGGGu---------GGUGUUgUG---CCGGG------UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 108450 | 0.68 | 0.590306 |
Target: 5'- uCGGCCgGCCucGgAACGCGaGCCUGCCc -3' miRNA: 3'- uGCCGGgUGG--UgUUGUGC-CGGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 143812 | 0.68 | 0.590306 |
Target: 5'- -aGGCCCggGCgGC-GCGCGGCCaGCCGu -3' miRNA: 3'- ugCCGGG--UGgUGuUGUGCCGGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 45812 | 0.68 | 0.590306 |
Target: 5'- cUGGCCCGaCGCGagGCGCGGUCUagauGCCAg -3' miRNA: 3'- uGCCGGGUgGUGU--UGUGCCGGG----UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 67298 | 0.68 | 0.584386 |
Target: 5'- -gGGCCCgagguuccgccgagcGCCACGACgGCGGuucggccaucCCCGCCGg -3' miRNA: 3'- ugCCGGG---------------UGGUGUUG-UGCC----------GGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 152642 | 0.68 | 0.580447 |
Target: 5'- cCGGCgCC-CCGcCGGCGCGGCCCugagugguGCCc -3' miRNA: 3'- uGCCG-GGuGGU-GUUGUGCCGGG--------UGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 35007 | 0.68 | 0.570622 |
Target: 5'- -gGGCgCACCuCGGCGgccaagcccCGGCCCGCCc -3' miRNA: 3'- ugCCGgGUGGuGUUGU---------GCCGGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 48384 | 0.68 | 0.570622 |
Target: 5'- -gGGCgugCCGCCGCGaccGCACGGgccCCCGCCc -3' miRNA: 3'- ugCCG---GGUGGUGU---UGUGCC---GGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 117759 | 0.68 | 0.570622 |
Target: 5'- gGCGcGCCCuuCGCGGcCACGGCCaACCc -3' miRNA: 3'- -UGC-CGGGugGUGUU-GUGCCGGgUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 121970 | 0.68 | 0.570622 |
Target: 5'- cCGGUCCGCgCGCGccccaagcACGCGGCCU-CCGg -3' miRNA: 3'- uGCCGGGUG-GUGU--------UGUGCCGGGuGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 53578 | 0.68 | 0.580447 |
Target: 5'- uGCGGCCCACCcugcucccgaaGCuGCugGuGCgCGCCc -3' miRNA: 3'- -UGCCGGGUGG-----------UGuUGugC-CGgGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 109339 | 0.68 | 0.580447 |
Target: 5'- uUGGCCCACuCGCGcguGC-UGGCCgGCCu -3' miRNA: 3'- uGCCGGGUG-GUGU---UGuGCCGGgUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 132133 | 0.68 | 0.580447 |
Target: 5'- gGCGGCCCugCGCcGCcgGgGGCCgGCgGg -3' miRNA: 3'- -UGCCGGGugGUGuUG--UgCCGGgUGgU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 20274 | 0.68 | 0.580447 |
Target: 5'- gGCGGCC--CCACGuGCGCGGCCCcaggcggguCCGg -3' miRNA: 3'- -UGCCGGguGGUGU-UGUGCCGGGu--------GGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 129740 | 0.68 | 0.580447 |
Target: 5'- aACGGCgggACCcCGACGUGGCCCGCCc -3' miRNA: 3'- -UGCCGgg-UGGuGUUGUGCCGGGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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