miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 3035 0.73 0.292991
Target:  5'- cCGGCCaGCCcCGGCACGGCC-GCCAg -3'
miRNA:   3'- uGCCGGgUGGuGUUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 69067 0.73 0.299671
Target:  5'- -aGGCCCGCgcgcgCGCAGCcgcucuCGGCCCGCCc -3'
miRNA:   3'- ugCCGGGUG-----GUGUUGu-----GCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 54531 0.73 0.306467
Target:  5'- cCGaGCCC-CCGCAcgucgACGCGGCCgACCGg -3'
miRNA:   3'- uGC-CGGGuGGUGU-----UGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 1342 0.73 0.292991
Target:  5'- cGCGGCCCG-CGCAGCuccgcCGGgCCGCCGc -3'
miRNA:   3'- -UGCCGGGUgGUGUUGu----GCCgGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 149463 0.73 0.309219
Target:  5'- gGCGGCuCCAcgcgggggccgcggcCCGCAGCA-GGUCCGCCAc -3'
miRNA:   3'- -UGCCG-GGU---------------GGUGUUGUgCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 87474 0.73 0.292991
Target:  5'- uCGGCCCACCuGCAcuAC-CGGCUCAUCGa -3'
miRNA:   3'- uGCCGGGUGG-UGU--UGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 74983 0.72 0.372909
Target:  5'- -aGGCCCGCCccCAAgGCcccGCCCGCCAa -3'
miRNA:   3'- ugCCGGGUGGu-GUUgUGc--CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 92942 0.72 0.342212
Target:  5'- -gGGCCCGCCGC--CGUGGCCCugCGu -3'
miRNA:   3'- ugCCGGGUGGUGuuGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 30422 0.72 0.334828
Target:  5'- cGCGGCCaCGCCccCGGCcCGGCCC-CCGg -3'
miRNA:   3'- -UGCCGG-GUGGu-GUUGuGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 119457 0.72 0.372119
Target:  5'- gACGGCgCCGCCguugugcaauccgGCGACAUGGCCCcgguuauCCGc -3'
miRNA:   3'- -UGCCG-GGUGG-------------UGUUGUGCCGGGu------GGU- -5'
5327 3' -60.9 NC_001798.1 + 75463 0.72 0.357329
Target:  5'- gUGGCCgGCC-CGGcCGCGGCCCugCu -3'
miRNA:   3'- uGCCGGgUGGuGUU-GUGCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 130539 0.72 0.342212
Target:  5'- gAUGGCCC-CgAgGugGgGGCCCACCAa -3'
miRNA:   3'- -UGCCGGGuGgUgUugUgCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 81616 0.72 0.349712
Target:  5'- gUGGCCCcUCGCGACgacccACGGCCCucGCCAc -3'
miRNA:   3'- uGCCGGGuGGUGUUG-----UGCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 121858 0.72 0.365061
Target:  5'- cACGGCCCcgggagGCGACACGGC-CACCGc -3'
miRNA:   3'- -UGCCGGGugg---UGUUGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 25668 0.72 0.372119
Target:  5'- gGCGGCCCuggGCAACcggcucuGCgGGCCCGCCAc -3'
miRNA:   3'- -UGCCGGGuggUGUUG-------UG-CCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 135500 0.72 0.372909
Target:  5'- cGCGGaCgCCGCgCACGGCGCGauccaggacGCCCGCCGg -3'
miRNA:   3'- -UGCC-G-GGUG-GUGUUGUGC---------CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 74765 0.72 0.365061
Target:  5'- uCGGCCCcggacGCCGCGGCcucgGGUCCACCGc -3'
miRNA:   3'- uGCCGGG-----UGGUGUUGug--CCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 16175 0.72 0.334828
Target:  5'- gGCGGCCCGCgGgGaccggggggacGCACGGgCCGCCc -3'
miRNA:   3'- -UGCCGGGUGgUgU-----------UGUGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 114569 0.72 0.368187
Target:  5'- -aGGCCguCCugggggcguuugagcGCGGCACGGCCgACCAg -3'
miRNA:   3'- ugCCGGguGG---------------UGUUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 46743 0.72 0.372909
Target:  5'- -aGGCCCAgaGaGACGCGGCCCACg- -3'
miRNA:   3'- ugCCGGGUggUgUUGUGCCGGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.