miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 46743 0.72 0.372909
Target:  5'- -aGGCCCAgaGaGACGCGGCCCACg- -3'
miRNA:   3'- ugCCGGGUggUgUUGUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 81616 0.72 0.349712
Target:  5'- gUGGCCCcUCGCGACgacccACGGCCCucGCCAc -3'
miRNA:   3'- uGCCGGGuGGUGUUG-----UGCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 116276 0.72 0.372909
Target:  5'- gACGGCCUuauGCgAC-ACGCGGCCCuggACCGc -3'
miRNA:   3'- -UGCCGGG---UGgUGuUGUGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 75463 0.72 0.357329
Target:  5'- gUGGCCgGCC-CGGcCGCGGCCCugCu -3'
miRNA:   3'- uGCCGGgUGGuGUU-GUGCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 109727 0.71 0.397128
Target:  5'- aACGcGCCCGCCGgGGCcuccucauaaccACGGCCCugUg -3'
miRNA:   3'- -UGC-CGGGUGGUgUUG------------UGCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 92530 0.71 0.397128
Target:  5'- -aGGCCC-CCAaccuGACGCGGCUCugCGa -3'
miRNA:   3'- ugCCGGGuGGUg---UUGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 52992 0.71 0.405423
Target:  5'- gGCGGCCCGCCACGccCAUaGGCgCCuccCCAu -3'
miRNA:   3'- -UGCCGGGUGGUGUu-GUG-CCG-GGu--GGU- -5'
5327 3' -60.9 NC_001798.1 + 78832 0.71 0.405423
Target:  5'- gACGGCCCcgGCCccuGGCGCGGCaCGCCGg -3'
miRNA:   3'- -UGCCGGG--UGGug-UUGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 23622 0.71 0.397128
Target:  5'- cCGGCCCGgacccCCGCGGCgaccGCGGgCCGCCu -3'
miRNA:   3'- uGCCGGGU-----GGUGUUG----UGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 85303 0.71 0.405423
Target:  5'- -gGGUCCGCC----CGCGGCCCGCCc -3'
miRNA:   3'- ugCCGGGUGGuguuGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 32560 0.71 0.405423
Target:  5'- gGCGGaCCUGCUGCGGgcCGCGGCCC-CCGc -3'
miRNA:   3'- -UGCC-GGGUGGUGUU--GUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 116989 0.71 0.397128
Target:  5'- cCGGCCCugCGCGACcUGGCgCGCg- -3'
miRNA:   3'- uGCCGGGugGUGUUGuGCCGgGUGgu -5'
5327 3' -60.9 NC_001798.1 + 71873 0.71 0.405423
Target:  5'- uCGGUUCACCugGcCGCGGC-CACCAa -3'
miRNA:   3'- uGCCGGGUGGugUuGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 110911 0.71 0.397128
Target:  5'- uGCGGCCaGCCGCccccGC-CGGCCCGCg- -3'
miRNA:   3'- -UGCCGGgUGGUGu---UGuGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 127975 0.71 0.397128
Target:  5'- cCGGCCCucucugagGCCuCAuC-CGGCCCGCCAa -3'
miRNA:   3'- uGCCGGG--------UGGuGUuGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 72840 0.71 0.405423
Target:  5'- -aGGCCgCACgCGCGGCACGGgCC-CCGa -3'
miRNA:   3'- ugCCGG-GUG-GUGUUGUGCCgGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 81454 0.71 0.405423
Target:  5'- gGCGGCCCcacGCC-CAAUcCGGCCCcgGCCc -3'
miRNA:   3'- -UGCCGGG---UGGuGUUGuGCCGGG--UGGu -5'
5327 3' -60.9 NC_001798.1 + 57677 0.71 0.413827
Target:  5'- -aGGCCCACgGCua---GGCCCACCc -3'
miRNA:   3'- ugCCGGGUGgUGuugugCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 91602 0.71 0.405423
Target:  5'- uCGGCCCggcagGCCGCGcuuauGgGCGGCCgGCCGc -3'
miRNA:   3'- uGCCGGG-----UGGUGU-----UgUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 74931 0.71 0.413827
Target:  5'- cCGGCCCACCugGAC----CCCACCGu -3'
miRNA:   3'- uGCCGGGUGGugUUGugccGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.