miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 53990 0.71 0.397128
Target:  5'- cUGGgCCACCugAcGCGCcuGGCCCACCu -3'
miRNA:   3'- uGCCgGGUGGugU-UGUG--CCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 110911 0.71 0.397128
Target:  5'- uGCGGCCaGCCGCccccGC-CGGCCCGCg- -3'
miRNA:   3'- -UGCCGGgUGGUGu---UGuGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 23007 0.71 0.388943
Target:  5'- gACGGCgucgucUCGCCGCGGCAgcUGGCCCugCu -3'
miRNA:   3'- -UGCCG------GGUGGUGUUGU--GCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 124085 0.71 0.388943
Target:  5'- gGCGGCgCCugCGCccCgACGGCCCACa- -3'
miRNA:   3'- -UGCCG-GGugGUGuuG-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 122628 0.71 0.38087
Target:  5'- -gGGCCgCGCUcCAAgGCGGCCCGCgCAu -3'
miRNA:   3'- ugCCGG-GUGGuGUUgUGCCGGGUG-GU- -5'
5327 3' -60.9 NC_001798.1 + 134172 0.71 0.388943
Target:  5'- cGCGGCCgcccgCGCCGCG--ACGGCCCcgGCCGc -3'
miRNA:   3'- -UGCCGG-----GUGGUGUugUGCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 102189 0.71 0.422337
Target:  5'- -gGGCCCggaaGCCugGcGCGCGGCgCGCCGg -3'
miRNA:   3'- ugCCGGG----UGGugU-UGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 24730 0.71 0.38087
Target:  5'- cGCGGCCgcccCGCCGCAcgccgACGCGcCCCGCCu -3'
miRNA:   3'- -UGCCGG----GUGGUGU-----UGUGCcGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 72840 0.71 0.405423
Target:  5'- -aGGCCgCACgCGCGGCACGGgCC-CCGa -3'
miRNA:   3'- ugCCGG-GUG-GUGUUGUGCCgGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 71873 0.71 0.405423
Target:  5'- uCGGUUCACCugGcCGCGGC-CACCAa -3'
miRNA:   3'- uGCCGGGUGGugUuGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 113504 0.71 0.405423
Target:  5'- cGCGGCCCugugcgcCCugGugGCGGCCgC-CCAu -3'
miRNA:   3'- -UGCCGGGu------GGugUugUGCCGG-GuGGU- -5'
5327 3' -60.9 NC_001798.1 + 116989 0.71 0.397128
Target:  5'- cCGGCCCugCGCGACcUGGCgCGCg- -3'
miRNA:   3'- uGCCGGGugGUGUUGuGCCGgGUGgu -5'
5327 3' -60.9 NC_001798.1 + 34784 0.71 0.422337
Target:  5'- cGCGGaaaCGCCGcCGGCGCGGCCCgggGCCc -3'
miRNA:   3'- -UGCCgg-GUGGU-GUUGUGCCGGG---UGGu -5'
5327 3' -60.9 NC_001798.1 + 78832 0.71 0.405423
Target:  5'- gACGGCCCcgGCCccuGGCGCGGCaCGCCGg -3'
miRNA:   3'- -UGCCGGG--UGGug-UUGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 32560 0.71 0.405423
Target:  5'- gGCGGaCCUGCUGCGGgcCGCGGCCC-CCGc -3'
miRNA:   3'- -UGCC-GGGUGGUGUU--GUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 81454 0.71 0.405423
Target:  5'- gGCGGCCCcacGCC-CAAUcCGGCCCcgGCCc -3'
miRNA:   3'- -UGCCGGG---UGGuGUUGuGCCGGG--UGGu -5'
5327 3' -60.9 NC_001798.1 + 85303 0.71 0.405423
Target:  5'- -gGGUCCGCC----CGCGGCCCGCCc -3'
miRNA:   3'- ugCCGGGUGGuguuGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 135056 0.71 0.413827
Target:  5'- gGCGGCCgGCCGCcuC-CuGCCCGCCu -3'
miRNA:   3'- -UGCCGGgUGGUGuuGuGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 57677 0.71 0.413827
Target:  5'- -aGGCCCACgGCua---GGCCCACCc -3'
miRNA:   3'- ugCCGGGUGgUGuugugCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 3508 0.71 0.38087
Target:  5'- cACGGCggCCGCCACGuGCGCcaGGCCCcaGCCGa -3'
miRNA:   3'- -UGCCG--GGUGGUGU-UGUG--CCGGG--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.