miRNA display CGI


Results 121 - 140 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 37496 0.7 0.439667
Target:  5'- -gGGCCCA--AC-GCGCGGCCCGCUg -3'
miRNA:   3'- ugCCGGGUggUGuUGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 73310 0.7 0.439667
Target:  5'- cCGGCCCA-CAgGACACgcaGGCCCGCg- -3'
miRNA:   3'- uGCCGGGUgGUgUUGUG---CCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 137924 0.7 0.457395
Target:  5'- gGCGGCCCgcGCCuccccCGGCcgccCGGUCCGCCGc -3'
miRNA:   3'- -UGCCGGG--UGGu----GUUGu---GCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 63732 0.7 0.448483
Target:  5'- uGCGGgCCACauaGGCGCGGCgCGCCu -3'
miRNA:   3'- -UGCCgGGUGgugUUGUGCCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 139577 0.7 0.439667
Target:  5'- gGCGGCCUuggagguCC-CGAC-CGGCCUGCCGc -3'
miRNA:   3'- -UGCCGGGu------GGuGUUGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 102402 0.69 0.503303
Target:  5'- gAUGGCCC-CCAcCAGCGCGGCgaucugggCCuCCAg -3'
miRNA:   3'- -UGCCGGGuGGU-GUUGUGCCG--------GGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 96076 0.69 0.503303
Target:  5'- -gGGCCCGCCGCcGCAUcaguccgcgcggGGCgCGCCu -3'
miRNA:   3'- ugCCGGGUGGUGuUGUG------------CCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 52350 0.69 0.497684
Target:  5'- gGCGGCCgAgCACGAggcgcugggcgacacCGCGGCgCGCCGc -3'
miRNA:   3'- -UGCCGGgUgGUGUU---------------GUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 153226 0.69 0.493954
Target:  5'- gACGGCCCGggcCCGCGGCGgCGGaggaCCCGCg- -3'
miRNA:   3'- -UGCCGGGU---GGUGUUGU-GCC----GGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 42407 0.69 0.493954
Target:  5'- uACGGCCU-CCACGAaguCGCGGUCCAaCAg -3'
miRNA:   3'- -UGCCGGGuGGUGUU---GUGCCGGGUgGU- -5'
5327 3' -60.9 NC_001798.1 + 25497 0.69 0.503303
Target:  5'- -gGGCCCGCUGCGccGCgcgGCGGCCUggaugcGCCAg -3'
miRNA:   3'- ugCCGGGUGGUGU--UG---UGCCGGG------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 150358 0.69 0.484685
Target:  5'- uGCGcGUCCACCggcacggcggGCGGCGCGGgCCCgGCCGc -3'
miRNA:   3'- -UGC-CGGGUGG----------UGUUGUGCC-GGG-UGGU- -5'
5327 3' -60.9 NC_001798.1 + 55956 0.69 0.493954
Target:  5'- -aGGCCacgGCCGgAACACGaGCCCGCg- -3'
miRNA:   3'- ugCCGGg--UGGUgUUGUGC-CGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 62275 0.69 0.493954
Target:  5'- -aGGCCCGCCGg---GCGGCCCGgCGg -3'
miRNA:   3'- ugCCGGGUGGUguugUGCCGGGUgGU- -5'
5327 3' -60.9 NC_001798.1 + 96001 0.69 0.484685
Target:  5'- -aGGCCCcgacuCCGCGAauCACGGCaCACCGg -3'
miRNA:   3'- ugCCGGGu----GGUGUU--GUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 126745 0.69 0.484685
Target:  5'- cGCGGCCgCAcCCACGACauccGCGGCUuuauCACCc -3'
miRNA:   3'- -UGCCGG-GU-GGUGUUG----UGCCGG----GUGGu -5'
5327 3' -60.9 NC_001798.1 + 57134 0.69 0.48192
Target:  5'- aGCGGCCCgacgaccgaguacaGCCGCgGGCugGcGCCCggGCCGg -3'
miRNA:   3'- -UGCCGGG--------------UGGUG-UUGugC-CGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 125885 0.69 0.483763
Target:  5'- gGCGGCCCACUugGaauuggagGCGCGGCuaaagucCCGCg- -3'
miRNA:   3'- -UGCCGGGUGGugU--------UGUGCCG-------GGUGgu -5'
5327 3' -60.9 NC_001798.1 + 86216 0.69 0.493954
Target:  5'- cCaGCCCgACCugGAcCugGGCCCGCUg -3'
miRNA:   3'- uGcCGGG-UGGugUU-GugCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 41915 0.69 0.503303
Target:  5'- uGCGGCCCGgCGaacgGACACGGCCUg--- -3'
miRNA:   3'- -UGCCGGGUgGUg---UUGUGCCGGGuggu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.