Results 41 - 60 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 3' | -60.9 | NC_001798.1 | + | 96990 | 0.73 | 0.306467 |
Target: 5'- gGCGGCgggGCCAgGGC-CGGCCCGCCGc -3' miRNA: 3'- -UGCCGgg-UGGUgUUGuGCCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 54531 | 0.73 | 0.306467 |
Target: 5'- cCGaGCCC-CCGCAcgucgACGCGGCCgACCGg -3' miRNA: 3'- uGC-CGGGuGGUGU-----UGUGCCGGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 149463 | 0.73 | 0.309219 |
Target: 5'- gGCGGCuCCAcgcgggggccgcggcCCGCAGCA-GGUCCGCCAc -3' miRNA: 3'- -UGCCG-GGU---------------GGUGUUGUgCCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 110061 | 0.73 | 0.313381 |
Target: 5'- aGCGGCCCGuCgCACAACGCGGagCC-CCGg -3' miRNA: 3'- -UGCCGGGU-G-GUGUUGUGCCg-GGuGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 70578 | 0.73 | 0.313381 |
Target: 5'- gGCGGCCCugggGCCGguGCGCG-UCCGCCAg -3' miRNA: 3'- -UGCCGGG----UGGUguUGUGCcGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 82069 | 0.73 | 0.313381 |
Target: 5'- -gGGgCC-CCGCGGC-CGGCCCACCc -3' miRNA: 3'- ugCCgGGuGGUGUUGuGCCGGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 16175 | 0.72 | 0.334828 |
Target: 5'- gGCGGCCCGCgGgGaccggggggacGCACGGgCCGCCc -3' miRNA: 3'- -UGCCGGGUGgUgU-----------UGUGCCgGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 30422 | 0.72 | 0.334828 |
Target: 5'- cGCGGCCaCGCCccCGGCcCGGCCC-CCGg -3' miRNA: 3'- -UGCCGG-GUGGu-GUUGuGCCGGGuGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 92942 | 0.72 | 0.342212 |
Target: 5'- -gGGCCCGCCGC--CGUGGCCCugCGu -3' miRNA: 3'- ugCCGGGUGGUGuuGUGCCGGGugGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 130539 | 0.72 | 0.342212 |
Target: 5'- gAUGGCCC-CgAgGugGgGGCCCACCAa -3' miRNA: 3'- -UGCCGGGuGgUgUugUgCCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 81616 | 0.72 | 0.349712 |
Target: 5'- gUGGCCCcUCGCGACgacccACGGCCCucGCCAc -3' miRNA: 3'- uGCCGGGuGGUGUUG-----UGCCGGG--UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 75463 | 0.72 | 0.357329 |
Target: 5'- gUGGCCgGCC-CGGcCGCGGCCCugCu -3' miRNA: 3'- uGCCGGgUGGuGUU-GUGCCGGGugGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 121858 | 0.72 | 0.365061 |
Target: 5'- cACGGCCCcgggagGCGACACGGC-CACCGc -3' miRNA: 3'- -UGCCGGGugg---UGUUGUGCCGgGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 83730 | 0.72 | 0.365061 |
Target: 5'- aACcGCCCACCAgAuaGCGGCCC-CCAg -3' miRNA: 3'- -UGcCGGGUGGUgUugUGCCGGGuGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 74765 | 0.72 | 0.365061 |
Target: 5'- uCGGCCCcggacGCCGCGGCcucgGGUCCACCGc -3' miRNA: 3'- uGCCGGG-----UGGUGUUGug--CCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 114569 | 0.72 | 0.368187 |
Target: 5'- -aGGCCguCCugggggcguuugagcGCGGCACGGCCgACCAg -3' miRNA: 3'- ugCCGGguGG---------------UGUUGUGCCGGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 25668 | 0.72 | 0.372119 |
Target: 5'- gGCGGCCCuggGCAACcggcucuGCgGGCCCGCCAc -3' miRNA: 3'- -UGCCGGGuggUGUUG-------UG-CCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 119457 | 0.72 | 0.372119 |
Target: 5'- gACGGCgCCGCCguugugcaauccgGCGACAUGGCCCcgguuauCCGc -3' miRNA: 3'- -UGCCG-GGUGG-------------UGUUGUGCCGGGu------GGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 146593 | 0.72 | 0.372909 |
Target: 5'- gACGGgCCGCgGCGccaGCGGCCCACg- -3' miRNA: 3'- -UGCCgGGUGgUGUug-UGCCGGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 21786 | 0.72 | 0.372909 |
Target: 5'- aACGGCCCGCCcccCGuccgGGCCCGCCu -3' miRNA: 3'- -UGCCGGGUGGu--GUugugCCGGGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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