miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 146593 0.72 0.372909
Target:  5'- gACGGgCCGCgGCGccaGCGGCCCACg- -3'
miRNA:   3'- -UGCCgGGUGgUGUug-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 46743 0.72 0.372909
Target:  5'- -aGGCCCAgaGaGACGCGGCCCACg- -3'
miRNA:   3'- ugCCGGGUggUgUUGUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 116276 0.72 0.372909
Target:  5'- gACGGCCUuauGCgAC-ACGCGGCCCuggACCGc -3'
miRNA:   3'- -UGCCGGG---UGgUGuUGUGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 21786 0.72 0.372909
Target:  5'- aACGGCCCGCCcccCGuccgGGCCCGCCu -3'
miRNA:   3'- -UGCCGGGUGGu--GUugugCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 123881 0.71 0.38087
Target:  5'- gACGGCgCCuACCugGuacccacggACACGGCCC-CCGa -3'
miRNA:   3'- -UGCCG-GG-UGGugU---------UGUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 74413 0.71 0.38087
Target:  5'- gGCGGaCCUgACCGC--CGCGGCCCugCAc -3'
miRNA:   3'- -UGCC-GGG-UGGUGuuGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 122628 0.71 0.38087
Target:  5'- -gGGCCgCGCUcCAAgGCGGCCCGCgCAu -3'
miRNA:   3'- ugCCGG-GUGGuGUUgUGCCGGGUG-GU- -5'
5327 3' -60.9 NC_001798.1 + 24730 0.71 0.38087
Target:  5'- cGCGGCCgcccCGCCGCAcgccgACGCGcCCCGCCu -3'
miRNA:   3'- -UGCCGG----GUGGUGU-----UGUGCcGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 104913 0.71 0.38087
Target:  5'- cUGGCCCACgUACAGC-CGGCCgCACg- -3'
miRNA:   3'- uGCCGGGUG-GUGUUGuGCCGG-GUGgu -5'
5327 3' -60.9 NC_001798.1 + 3508 0.71 0.38087
Target:  5'- cACGGCggCCGCCACGuGCGCcaGGCCCcaGCCGa -3'
miRNA:   3'- -UGCCG--GGUGGUGU-UGUG--CCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 23682 0.71 0.38087
Target:  5'- gUGGCCgGCCGCGACgccACGGgCCGCUu -3'
miRNA:   3'- uGCCGGgUGGUGUUG---UGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 53927 0.71 0.388131
Target:  5'- -gGGCCCagcggcACCACGggcucgaugcaguGCAUGGCCCugCGg -3'
miRNA:   3'- ugCCGGG------UGGUGU-------------UGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 124085 0.71 0.388943
Target:  5'- gGCGGCgCCugCGCccCgACGGCCCACa- -3'
miRNA:   3'- -UGCCG-GGugGUGuuG-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 134172 0.71 0.388943
Target:  5'- cGCGGCCgcccgCGCCGCG--ACGGCCCcgGCCGc -3'
miRNA:   3'- -UGCCGG-----GUGGUGUugUGCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 23007 0.71 0.388943
Target:  5'- gACGGCgucgucUCGCCGCGGCAgcUGGCCCugCu -3'
miRNA:   3'- -UGCCG------GGUGGUGUUGU--GCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 74236 0.71 0.395483
Target:  5'- cACGGCCUAUCuguuugacccGCACGGCCUGCCc -3'
miRNA:   3'- -UGCCGGGUGGugu-------UGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 127975 0.71 0.397128
Target:  5'- cCGGCCCucucugagGCCuCAuC-CGGCCCGCCAa -3'
miRNA:   3'- uGCCGGG--------UGGuGUuGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 123401 0.71 0.397128
Target:  5'- -aGGCCCcCCGgGAgcCGCGGCcCCGCCGg -3'
miRNA:   3'- ugCCGGGuGGUgUU--GUGCCG-GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 116989 0.71 0.397128
Target:  5'- cCGGCCCugCGCGACcUGGCgCGCg- -3'
miRNA:   3'- uGCCGGGugGUGUUGuGCCGgGUGgu -5'
5327 3' -60.9 NC_001798.1 + 110911 0.71 0.397128
Target:  5'- uGCGGCCaGCCGCccccGC-CGGCCCGCg- -3'
miRNA:   3'- -UGCCGGgUGGUGu---UGuGCCGGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.