miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 35460 0.7 0.430951
Target:  5'- cGCGGCCCGuCUGCuggccCGCGGCCCGuCUg -3'
miRNA:   3'- -UGCCGGGU-GGUGuu---GUGCCGGGU-GGu -5'
5327 3' -60.9 NC_001798.1 + 27754 0.7 0.430951
Target:  5'- -gGGCCC---GCAACACGGCCCgggcugcgcacGCCAg -3'
miRNA:   3'- ugCCGGGuggUGUUGUGCCGGG-----------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 73310 0.7 0.439667
Target:  5'- cCGGCCCA-CAgGACACgcaGGCCCGCg- -3'
miRNA:   3'- uGCCGGGUgGUgUUGUG---CCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 61859 0.7 0.439667
Target:  5'- cGCGGgCCGCCGgccCAGCccgGCGGCCC-CCu -3'
miRNA:   3'- -UGCCgGGUGGU---GUUG---UGCCGGGuGGu -5'
5327 3' -60.9 NC_001798.1 + 139577 0.7 0.439667
Target:  5'- gGCGGCCUuggagguCC-CGAC-CGGCCUGCCGc -3'
miRNA:   3'- -UGCCGGGu------GGuGUUGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 37496 0.7 0.439667
Target:  5'- -gGGCCCA--AC-GCGCGGCCCGCUg -3'
miRNA:   3'- ugCCGGGUggUGuUGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 31284 0.7 0.448483
Target:  5'- gGCGGCCCugC-CGuCGCGGCCgucguGCCGa -3'
miRNA:   3'- -UGCCGGGugGuGUuGUGCCGGg----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 93031 0.7 0.448483
Target:  5'- cGCGGCCCuccccGCCgACAuuacguuCACGGCCUucgagGCCAg -3'
miRNA:   3'- -UGCCGGG-----UGG-UGUu------GUGCCGGG-----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 76562 0.7 0.448483
Target:  5'- cGCGGCCUucguCCcgGCGAC-CGGCCCcgcGCCGu -3'
miRNA:   3'- -UGCCGGGu---GG--UGUUGuGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 11193 0.7 0.448483
Target:  5'- -gGGCCUGCCGa---ACGGCCCGCUu -3'
miRNA:   3'- ugCCGGGUGGUguugUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 63732 0.7 0.448483
Target:  5'- uGCGGgCCACauaGGCGCGGCgCGCCu -3'
miRNA:   3'- -UGCCgGGUGgugUUGUGCCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 74199 0.7 0.448483
Target:  5'- uCGGCCC-CCugGGCAUggGGCuCUACCGg -3'
miRNA:   3'- uGCCGGGuGGugUUGUG--CCG-GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 112628 0.7 0.457395
Target:  5'- gACGGCuuCCGUCAC-GCACGGCCgGCCu -3'
miRNA:   3'- -UGCCG--GGUGGUGuUGUGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 137924 0.7 0.457395
Target:  5'- gGCGGCCCgcGCCuccccCGGCcgccCGGUCCGCCGc -3'
miRNA:   3'- -UGCCGGG--UGGu----GUUGu---GCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 93762 0.7 0.457395
Target:  5'- -gGGCCCGCCACcccaaguuCGCGaGCgCCGCCc -3'
miRNA:   3'- ugCCGGGUGGUGuu------GUGC-CG-GGUGGu -5'
5327 3' -60.9 NC_001798.1 + 52428 0.7 0.465497
Target:  5'- cGCGGCCguguacgCGCUGC-ACACGGCCCuggcgACCGu -3'
miRNA:   3'- -UGCCGG-------GUGGUGuUGUGCCGGG-----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 94437 0.7 0.466402
Target:  5'- aACGGCCgGCCAg---ACGGCCCccGCCGa -3'
miRNA:   3'- -UGCCGGgUGGUguugUGCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 68940 0.7 0.466402
Target:  5'- cCGGUCCAgCCGCGcCcCGGCCCGCg- -3'
miRNA:   3'- uGCCGGGU-GGUGUuGuGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 54567 0.7 0.466402
Target:  5'- cCGaGCCCugCGcCGGC-CGGCCgGCCAc -3'
miRNA:   3'- uGC-CGGGugGU-GUUGuGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 51431 0.7 0.466402
Target:  5'- gACGGCC--CCGgGGCGCGGCCUuCCGc -3'
miRNA:   3'- -UGCCGGguGGUgUUGUGCCGGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.