miRNA display CGI


Results 141 - 160 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 41915 0.69 0.503303
Target:  5'- uGCGGCCCGgCGaacgGACACGGCCUg--- -3'
miRNA:   3'- -UGCCGGGUgGUg---UUGUGCCGGGuggu -5'
5327 3' -60.9 NC_001798.1 + 129520 0.69 0.503303
Target:  5'- -gGGCCUcgcguucuCCGgGGCGCGGCCCugCu -3'
miRNA:   3'- ugCCGGGu-------GGUgUUGUGCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 25497 0.69 0.503303
Target:  5'- -gGGCCCGCUGCGccGCgcgGCGGCCUggaugcGCCAg -3'
miRNA:   3'- ugCCGGGUGGUGU--UG---UGCCGGG------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 78288 0.69 0.509894
Target:  5'- gGCGG-CCGCCGCGGagcagauaucCGCGGCCCggaaugacccggagGCCAc -3'
miRNA:   3'- -UGCCgGGUGGUGUU----------GUGCCGGG--------------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 58697 0.69 0.511783
Target:  5'- -aGGgCCGCgGCGGCGCGGgggucgaUCCACCAg -3'
miRNA:   3'- ugCCgGGUGgUGUUGUGCC-------GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 100872 0.69 0.512729
Target:  5'- cUGGCCgGCCugGuCGCGGCCUucuucGCCu -3'
miRNA:   3'- uGCCGGgUGGugUuGUGCCGGG-----UGGu -5'
5327 3' -60.9 NC_001798.1 + 41389 0.69 0.512729
Target:  5'- gAUGGCCgGgaGgGACACGGCCCgACCu -3'
miRNA:   3'- -UGCCGGgUggUgUUGUGCCGGG-UGGu -5'
5327 3' -60.9 NC_001798.1 + 26355 0.69 0.512729
Target:  5'- gGCGGCCCGgCGgAgcuGCGCGGgCCGCg- -3'
miRNA:   3'- -UGCCGGGUgGUgU---UGUGCCgGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 24341 0.69 0.521273
Target:  5'- gGCGGCgacgccaaCCGCCACGACggcgacgacgcccGCGggaaGCCCGCCGc -3'
miRNA:   3'- -UGCCG--------GGUGGUGUUG-------------UGC----CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 2549 0.69 0.522226
Target:  5'- cGCGGCCC-CCGCGGgAgGGgCgGCCGc -3'
miRNA:   3'- -UGCCGGGuGGUGUUgUgCCgGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 149324 0.69 0.522226
Target:  5'- aGCGcGCCCACCAgggugcccugguCAaagaGCAUGuuGCCCACCGg -3'
miRNA:   3'- -UGC-CGGGUGGU------------GU----UGUGC--CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 117657 0.69 0.522226
Target:  5'- cCGGCCCugcaacCCGCGgggacGCGCGGCCgGCg- -3'
miRNA:   3'- uGCCGGGu-----GGUGU-----UGUGCCGGgUGgu -5'
5327 3' -60.9 NC_001798.1 + 117458 0.69 0.522226
Target:  5'- -gGGCCCcCCcgcugcuagACAACGCGG-CCGCCGu -3'
miRNA:   3'- ugCCGGGuGG---------UGUUGUGCCgGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 3867 0.69 0.522226
Target:  5'- cCaGCCCGCCguACAGCACGcGCCCcgggggcgggggGCCGg -3'
miRNA:   3'- uGcCGGGUGG--UGUUGUGC-CGGG------------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 363 0.69 0.53179
Target:  5'- --cGCCCGcCCGC-ACACGGuucCCCGCCAc -3'
miRNA:   3'- ugcCGGGU-GGUGuUGUGCC---GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 31853 0.69 0.53179
Target:  5'- uGCcGCCCcCCACGccgcggaggggGCgGCGGCCCGCCc -3'
miRNA:   3'- -UGcCGGGuGGUGU-----------UG-UGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 2864 0.69 0.53179
Target:  5'- gGCGGCCuCGCUGCcGC-CGGCCaCGCgCAg -3'
miRNA:   3'- -UGCCGG-GUGGUGuUGuGCCGG-GUG-GU- -5'
5327 3' -60.9 NC_001798.1 + 95110 0.68 0.538523
Target:  5'- uGCGGCCCgugaugGCCGCGcgcccgauggucguGCugGGCCuCAgCAu -3'
miRNA:   3'- -UGCCGGG------UGGUGU--------------UGugCCGG-GUgGU- -5'
5327 3' -60.9 NC_001798.1 + 75270 0.68 0.540452
Target:  5'- gGCGGUCCGgcUCGCGGCGCgcgaugccgcccuGGCCCGCgAg -3'
miRNA:   3'- -UGCCGGGU--GGUGUUGUG-------------CCGGGUGgU- -5'
5327 3' -60.9 NC_001798.1 + 72955 0.68 0.540452
Target:  5'- uCGGCCgaucagcgCACCGCAGCcauucaggaggugAUGGCCCACgCGa -3'
miRNA:   3'- uGCCGG--------GUGGUGUUG-------------UGCCGGGUG-GU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.