miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 33938 0.66 0.669643
Target:  5'- cGCGuGCCUACCuuucccuaGCGGCccCGGCCC-CCGg -3'
miRNA:   3'- -UGC-CGGGUGG--------UGUUGu-GCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 86161 0.66 0.669643
Target:  5'- -gGGCgCGCaugCGCGACGCGGcCCCGCg- -3'
miRNA:   3'- ugCCGgGUG---GUGUUGUGCC-GGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 128402 0.66 0.669643
Target:  5'- -gGGCCCugCuuCGGCGgGGCCUgacgACCGc -3'
miRNA:   3'- ugCCGGGugGu-GUUGUgCCGGG----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 137990 0.66 0.669643
Target:  5'- -gGGCgCGCCGCAGCucGCGGUCgcgCGCCu -3'
miRNA:   3'- ugCCGgGUGGUGUUG--UGCCGG---GUGGu -5'
5327 3' -60.9 NC_001798.1 + 4484 0.66 0.669643
Target:  5'- cCGGUCCGCgGacccaGCGGCCCGCg- -3'
miRNA:   3'- uGCCGGGUGgUguug-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 31664 0.66 0.669643
Target:  5'- cGCGGCCgGgC-CcGCGCcGCCCGCCGu -3'
miRNA:   3'- -UGCCGGgUgGuGuUGUGcCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 35536 0.66 0.669643
Target:  5'- cGCGGCCgGCgCGgGGCGuugcCGGCCCgGCCc -3'
miRNA:   3'- -UGCCGGgUG-GUgUUGU----GCCGGG-UGGu -5'
5327 3' -60.9 NC_001798.1 + 98743 0.66 0.669643
Target:  5'- aGCGGCCCGagGCGACcCcGCCCcCCGa -3'
miRNA:   3'- -UGCCGGGUggUGUUGuGcCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 109644 0.66 0.669643
Target:  5'- gAUGGUCCGCCgagcgcuguuuuACGcCACGGCCguCCu -3'
miRNA:   3'- -UGCCGGGUGG------------UGUuGUGCCGGguGGu -5'
5327 3' -60.9 NC_001798.1 + 2049 0.66 0.669643
Target:  5'- -aGGgCCGCCagcagGCAGgACaGCCCGCCGc -3'
miRNA:   3'- ugCCgGGUGG-----UGUUgUGcCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 106701 0.66 0.663708
Target:  5'- -gGGCCUACCgACGgccGCGCGGCgucccguccuagccaUCGCCAg -3'
miRNA:   3'- ugCCGGGUGG-UGU---UGUGCCG---------------GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 150797 0.66 0.659747
Target:  5'- ---cCCCGcCCGCAACGgGGCgCCGCCGc -3'
miRNA:   3'- ugccGGGU-GGUGUUGUgCCG-GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 25285 0.66 0.659747
Target:  5'- -gGGCCCAgCCACAcGC-CGGCgcccucggCCGCCGc -3'
miRNA:   3'- ugCCGGGU-GGUGU-UGuGCCG--------GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 33637 0.66 0.659747
Target:  5'- gGC-GCCCACCcCGcccGCACaccuGCCCGCCAc -3'
miRNA:   3'- -UGcCGGGUGGuGU---UGUGc---CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 71711 0.66 0.659747
Target:  5'- gACGGCCgagCGCCGCuucAGCGcCGGCCaGCCc -3'
miRNA:   3'- -UGCCGG---GUGGUG---UUGU-GCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 92984 0.66 0.659747
Target:  5'- gUGGCCCG-CGCGGC-C-GCCCACCu -3'
miRNA:   3'- uGCCGGGUgGUGUUGuGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 28649 0.66 0.659747
Target:  5'- -gGGCCgACCGCGACcgguucCGGCgCCGCg- -3'
miRNA:   3'- ugCCGGgUGGUGUUGu-----GCCG-GGUGgu -5'
5327 3' -60.9 NC_001798.1 + 28797 0.66 0.659747
Target:  5'- gGCGGCgcgcggguccuCCGCCGCcGCG-GGCCCggGCCGu -3'
miRNA:   3'- -UGCCG-----------GGUGGUGuUGUgCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 61705 0.66 0.659747
Target:  5'- cUGGCCCG-CACG--ACGGCCCaguGCCGc -3'
miRNA:   3'- uGCCGGGUgGUGUugUGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 83804 0.66 0.658756
Target:  5'- -gGGCCCGgaACAacuGCACGGCCUgaugcacggacggGCCGg -3'
miRNA:   3'- ugCCGGGUggUGU---UGUGCCGGG-------------UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.