miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 81995 0.67 0.653799
Target:  5'- aGCGGUcguccccgggggcgaCCGCCGC--CGCGGCCgcCGCCAg -3'
miRNA:   3'- -UGCCG---------------GGUGGUGuuGUGCCGG--GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 94568 0.67 0.64983
Target:  5'- -aGG-CCGCCAaGGCGCGGgUCGCCAg -3'
miRNA:   3'- ugCCgGGUGGUgUUGUGCCgGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 116138 0.67 0.64983
Target:  5'- gUGGCCCACguCGAgGCccuGGCCCAgCu -3'
miRNA:   3'- uGCCGGGUGguGUUgUG---CCGGGUgGu -5'
5327 3' -60.9 NC_001798.1 + 24428 0.67 0.64983
Target:  5'- cCGGCCgACgAgcGCGCGguGCCCGCCGg -3'
miRNA:   3'- uGCCGGgUGgUguUGUGC--CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 41664 0.67 0.64983
Target:  5'- aGCGGaCCGCgaGCAugGCGuGCCCGCa- -3'
miRNA:   3'- -UGCCgGGUGg-UGUugUGC-CGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 110354 0.67 0.64983
Target:  5'- cACGGaugCCACCcaACAGCAgcUGGCCCagggGCCGg -3'
miRNA:   3'- -UGCCg--GGUGG--UGUUGU--GCCGGG----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 128147 0.67 0.64983
Target:  5'- uCGaGCgCCACCu--GCGCGGCCUGCUg -3'
miRNA:   3'- uGC-CG-GGUGGuguUGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 23279 0.67 0.648837
Target:  5'- cAUGGCCagccuguCGCCGCGACccccgGCGcCCCGCCGa -3'
miRNA:   3'- -UGCCGG-------GUGGUGUUG-----UGCcGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 81105 0.67 0.648837
Target:  5'- cGCGGCgagCGCCGcCGACGCGGaCCCcuucuucgcgcggGCCAu -3'
miRNA:   3'- -UGCCGg--GUGGU-GUUGUGCC-GGG-------------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 25900 0.67 0.6399
Target:  5'- gUGGUCuCGCgGCAGCACG-CCUACCu -3'
miRNA:   3'- uGCCGG-GUGgUGUUGUGCcGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 93238 0.67 0.6399
Target:  5'- gUGGCCCcugcuugaggGCCAgGAaacgccCGCGGCCCGCg- -3'
miRNA:   3'- uGCCGGG----------UGGUgUU------GUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 125553 0.67 0.6399
Target:  5'- -aGGCCCGCCG--ACGCcucgucgacGCCCACCu -3'
miRNA:   3'- ugCCGGGUGGUguUGUGc--------CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 144283 0.67 0.6399
Target:  5'- aAC-GCgCGCCGaAACGCGGCCCAguCCAg -3'
miRNA:   3'- -UGcCGgGUGGUgUUGUGCCGGGU--GGU- -5'
5327 3' -60.9 NC_001798.1 + 146634 0.67 0.6399
Target:  5'- -aGGCCC-CCGCgGGCauccgGCGGCCgGCCc -3'
miRNA:   3'- ugCCGGGuGGUG-UUG-----UGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 151273 0.67 0.6399
Target:  5'- cCGGCCCG-CACGGCcgccuCGGCCU-CCAc -3'
miRNA:   3'- uGCCGGGUgGUGUUGu----GCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 134294 0.67 0.633938
Target:  5'- -gGGCCCucuucgucccgcugcGCCugGGCugGGaCCCGCa- -3'
miRNA:   3'- ugCCGGG---------------UGGugUUGugCC-GGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 98494 0.67 0.629964
Target:  5'- aGCGGgCgGCgggaGCGACGCgcccccguaGGCCCGCCAu -3'
miRNA:   3'- -UGCCgGgUGg---UGUUGUG---------CCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 57748 0.67 0.629964
Target:  5'- gGCGcGCCCGgCGCAGCGaggaggguugcCGGaaaCCACCGc -3'
miRNA:   3'- -UGC-CGGGUgGUGUUGU-----------GCCg--GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 150562 0.67 0.620029
Target:  5'- aGCGGCCCGgggcCCGCGGgGCGGCgCGg-- -3'
miRNA:   3'- -UGCCGGGU----GGUGUUgUGCCGgGUggu -5'
5327 3' -60.9 NC_001798.1 + 131011 0.67 0.620029
Target:  5'- uACGGgCCGCCGCcaGGCgACGGgCCGCa- -3'
miRNA:   3'- -UGCCgGGUGGUG--UUG-UGCCgGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.