miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 103712 0.67 0.620029
Target:  5'- -gGGCCCGCCGuuguUGCGuGUCCGCCGa -3'
miRNA:   3'- ugCCGGGUGGUguu-GUGC-CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 124192 0.67 0.620029
Target:  5'- uAUGGCCCAgCGCAcCcUGGCCguCCGg -3'
miRNA:   3'- -UGCCGGGUgGUGUuGuGCCGGguGGU- -5'
5327 3' -60.9 NC_001798.1 + 131011 0.67 0.620029
Target:  5'- uACGGgCCGCCGCcaGGCgACGGgCCGCa- -3'
miRNA:   3'- -UGCCgGGUGGUG--UUG-UGCCgGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 150562 0.67 0.620029
Target:  5'- aGCGGCCCGgggcCCGCGGgGCGGCgCGg-- -3'
miRNA:   3'- -UGCCGGGU----GGUGUUgUGCCGgGUggu -5'
5327 3' -60.9 NC_001798.1 + 27636 0.67 0.620029
Target:  5'- --cGCCCGCCGC--CGCcGCCCGCCu -3'
miRNA:   3'- ugcCGGGUGGUGuuGUGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 134137 0.67 0.610104
Target:  5'- uACGGCUCcCC-CGACGucuCGGCCC-CCGg -3'
miRNA:   3'- -UGCCGGGuGGuGUUGU---GCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 65005 0.67 0.610104
Target:  5'- -aGGCCCAUCuugaGGCACgccgugugcaGGCCCugCAu -3'
miRNA:   3'- ugCCGGGUGGug--UUGUG----------CCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 77686 0.67 0.610104
Target:  5'- gGCGGCCCAgCGCGcccgggGCAgcagcgagcgcUGGgCCGCCGg -3'
miRNA:   3'- -UGCCGGGUgGUGU------UGU-----------GCCgGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 2973 0.67 0.610104
Target:  5'- uCGGCgUGCgGCGGgGCGGCCgGCCc -3'
miRNA:   3'- uGCCGgGUGgUGUUgUGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 23114 0.67 0.610104
Target:  5'- aGCGGCCCGCuCGCcuucuccgcCGCGGaCCCccuCCAu -3'
miRNA:   3'- -UGCCGGGUG-GUGuu-------GUGCC-GGGu--GGU- -5'
5327 3' -60.9 NC_001798.1 + 94226 0.67 0.609112
Target:  5'- gGCGGUCCaaccucgccguguACCAgGACcUGGCCCugaGCCAg -3'
miRNA:   3'- -UGCCGGG-------------UGGUgUUGuGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 74652 0.67 0.600194
Target:  5'- -aGGCCCcCCGgGGgGCcucgGGCCCACCc -3'
miRNA:   3'- ugCCGGGuGGUgUUgUG----CCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 21316 0.67 0.600194
Target:  5'- cCGGCCC-CC-CGGCccccCGGCCCcCCGg -3'
miRNA:   3'- uGCCGGGuGGuGUUGu---GCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 116874 0.67 0.600194
Target:  5'- cAUGGCCC-CC-CAGCACcuGGaCCaCACCAu -3'
miRNA:   3'- -UGCCGGGuGGuGUUGUG--CC-GG-GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 138732 0.67 0.600194
Target:  5'- -gGGCCgGCgCGCucCGCGGCCCcggcgaccgugGCCAg -3'
miRNA:   3'- ugCCGGgUG-GUGuuGUGCCGGG-----------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 118511 0.67 0.599203
Target:  5'- cCGGCCCucCCGCAcccccGCguuccggugucucGCGGCCCggcGCCAu -3'
miRNA:   3'- uGCCGGGu-GGUGU-----UG-------------UGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 122413 0.67 0.597225
Target:  5'- cACGGCCCugacggaggccuguGCCGCcgAGCGCGucgugcgccCCCACCAg -3'
miRNA:   3'- -UGCCGGG--------------UGGUG--UUGUGCc--------GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 86850 0.68 0.594258
Target:  5'- -gGGCCCgGCCGCGACaagacccgGCGGCggucgcgcuuuuccgCCGCCGg -3'
miRNA:   3'- ugCCGGG-UGGUGUUG--------UGCCG---------------GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 143812 0.68 0.590306
Target:  5'- -aGGCCCggGCgGC-GCGCGGCCaGCCGu -3'
miRNA:   3'- ugCCGGG--UGgUGuUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 108450 0.68 0.590306
Target:  5'- uCGGCCgGCCucGgAACGCGaGCCUGCCc -3'
miRNA:   3'- uGCCGGgUGG--UgUUGUGC-CGGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.