miRNA display CGI


Results 121 - 140 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 54429 0.68 0.590306
Target:  5'- aACGGaCCCGgCGCGACaACGcaccCCCGCCGc -3'
miRNA:   3'- -UGCC-GGGUgGUGUUG-UGCc---GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 73344 0.68 0.590306
Target:  5'- gACGcGCCCggcggGCCGCGAgACGGUCCcuugGCCc -3'
miRNA:   3'- -UGC-CGGG-----UGGUGUUgUGCCGGG----UGGu -5'
5327 3' -60.9 NC_001798.1 + 95561 0.68 0.590306
Target:  5'- cGCGGCCCuggagguggcCCACGAgGCggaGGCCCuggucaGCCAg -3'
miRNA:   3'- -UGCCGGGu---------GGUGUUgUG---CCGGG------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 108450 0.68 0.590306
Target:  5'- uCGGCCgGCCucGgAACGCGaGCCUGCCc -3'
miRNA:   3'- uGCCGGgUGG--UgUUGUGC-CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 143812 0.68 0.590306
Target:  5'- -aGGCCCggGCgGC-GCGCGGCCaGCCGu -3'
miRNA:   3'- ugCCGGG--UGgUGuUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 45812 0.68 0.590306
Target:  5'- cUGGCCCGaCGCGagGCGCGGUCUagauGCCAg -3'
miRNA:   3'- uGCCGGGUgGUGU--UGUGCCGGG----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 75985 0.68 0.589318
Target:  5'- cCGuGCCCGCCgccccgggcgccgGCGGCAgGGCCCcguGCCc -3'
miRNA:   3'- uGC-CGGGUGG-------------UGUUGUgCCGGG---UGGu -5'
5327 3' -60.9 NC_001798.1 + 67298 0.68 0.584386
Target:  5'- -gGGCCCgagguuccgccgagcGCCACGACgGCGGuucggccaucCCCGCCGg -3'
miRNA:   3'- ugCCGGG---------------UGGUGUUG-UGCC----------GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 53578 0.68 0.580447
Target:  5'- uGCGGCCCACCcugcucccgaaGCuGCugGuGCgCGCCc -3'
miRNA:   3'- -UGCCGGGUGG-----------UGuUGugC-CGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 109339 0.68 0.580447
Target:  5'- uUGGCCCACuCGCGcguGC-UGGCCgGCCu -3'
miRNA:   3'- uGCCGGGUG-GUGU---UGuGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 132133 0.68 0.580447
Target:  5'- gGCGGCCCugCGCcGCcgGgGGCCgGCgGg -3'
miRNA:   3'- -UGCCGGGugGUGuUG--UgCCGGgUGgU- -5'
5327 3' -60.9 NC_001798.1 + 20274 0.68 0.580447
Target:  5'- gGCGGCC--CCACGuGCGCGGCCCcaggcggguCCGg -3'
miRNA:   3'- -UGCCGGguGGUGU-UGUGCCGGGu--------GGU- -5'
5327 3' -60.9 NC_001798.1 + 129740 0.68 0.580447
Target:  5'- aACGGCgggACCcCGACGUGGCCCGCCc -3'
miRNA:   3'- -UGCCGgg-UGGuGUUGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 152642 0.68 0.580447
Target:  5'- cCGGCgCC-CCGcCGGCGCGGCCCugagugguGCCc -3'
miRNA:   3'- uGCCG-GGuGGU-GUUGUGCCGGG--------UGGu -5'
5327 3' -60.9 NC_001798.1 + 58829 0.68 0.570622
Target:  5'- uCGGCCagCACCAgCAGCgccgcguagGCGGCCCcgagcGCCAg -3'
miRNA:   3'- uGCCGG--GUGGU-GUUG---------UGCCGGG-----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 9136 0.68 0.570622
Target:  5'- gUGGUCUGCgGCAcgcggGCGCGGCgCCGCCc -3'
miRNA:   3'- uGCCGGGUGgUGU-----UGUGCCG-GGUGGu -5'
5327 3' -60.9 NC_001798.1 + 35007 0.68 0.570622
Target:  5'- -gGGCgCACCuCGGCGgccaagcccCGGCCCGCCc -3'
miRNA:   3'- ugCCGgGUGGuGUUGU---------GCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 48384 0.68 0.570622
Target:  5'- -gGGCgugCCGCCGCGaccGCACGGgccCCCGCCc -3'
miRNA:   3'- ugCCG---GGUGGUGU---UGUGCC---GGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 117759 0.68 0.570622
Target:  5'- gGCGcGCCCuuCGCGGcCACGGCCaACCc -3'
miRNA:   3'- -UGC-CGGGugGUGUU-GUGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 121970 0.68 0.570622
Target:  5'- cCGGUCCGCgCGCGccccaagcACGCGGCCU-CCGg -3'
miRNA:   3'- uGCCGGGUG-GUGU--------UGUGCCGGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.