miRNA display CGI


Results 141 - 160 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 31572 0.68 0.569642
Target:  5'- -gGGCgCGCCGCGcgcccccGCGCGGCCguCGCCc -3'
miRNA:   3'- ugCCGgGUGGUGU-------UGUGCCGG--GUGGu -5'
5327 3' -60.9 NC_001798.1 + 2799 0.68 0.560839
Target:  5'- -gGGCuCCGCgGCAGCGCcgGGCCCAgggccCCGg -3'
miRNA:   3'- ugCCG-GGUGgUGUUGUG--CCGGGU-----GGU- -5'
5327 3' -60.9 NC_001798.1 + 49309 0.68 0.560839
Target:  5'- uCGcGCCCACgGCGACgugGCGuuccccacccuGCCCGCCAc -3'
miRNA:   3'- uGC-CGGGUGgUGUUG---UGC-----------CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 61908 0.68 0.560839
Target:  5'- cCGGCCCugCGCc---UGGCUCACCu -3'
miRNA:   3'- uGCCGGGugGUGuuguGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 117832 0.68 0.560839
Target:  5'- -gGGCCUAUCACcucAACGgGGCCuCGCCc -3'
miRNA:   3'- ugCCGGGUGGUG---UUGUgCCGG-GUGGu -5'
5327 3' -60.9 NC_001798.1 + 87731 0.68 0.560839
Target:  5'- cCGGCCC-CCGcCGGCccgaaccccGCGGCCCugaGCCGc -3'
miRNA:   3'- uGCCGGGuGGU-GUUG---------UGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 153372 0.68 0.560839
Target:  5'- uCGG-CCGCCGCcACGCGGCgCCggaACCGg -3'
miRNA:   3'- uGCCgGGUGGUGuUGUGCCG-GG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 128852 0.68 0.554991
Target:  5'- cGCGGCCU-CCGCGuacgaggaccugaugGCGCGGCgaUCGCCGg -3'
miRNA:   3'- -UGCCGGGuGGUGU---------------UGUGCCG--GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 150462 0.68 0.551102
Target:  5'- gACGGCCgCGCgGgGgcGCGCGGCgCGCCc -3'
miRNA:   3'- -UGCCGG-GUGgUgU--UGUGCCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 135020 0.68 0.551102
Target:  5'- cCuGCCC-CCGCgGGCAUGGCCgGCCGu -3'
miRNA:   3'- uGcCGGGuGGUG-UUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 39676 0.68 0.551102
Target:  5'- cCGGCCCcgGCgGCGACcucGCcGCCCGCCu -3'
miRNA:   3'- uGCCGGG--UGgUGUUG---UGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 127743 0.68 0.551102
Target:  5'- uGCGG-CCGCCGCAACAccCGGC--GCCAa -3'
miRNA:   3'- -UGCCgGGUGGUGUUGU--GCCGggUGGU- -5'
5327 3' -60.9 NC_001798.1 + 28309 0.68 0.550131
Target:  5'- uACGGCUgcgCACCACGACGgaguaccUGGCgCGCCu -3'
miRNA:   3'- -UGCCGG---GUGGUGUUGU-------GCCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 105396 0.68 0.541418
Target:  5'- gGCGGCguucuccagggCCGCCGCGGcCGCGGUgCGCUg -3'
miRNA:   3'- -UGCCG-----------GGUGGUGUU-GUGCCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 25014 0.68 0.541418
Target:  5'- cGCGGCCgACuCGCucGC-CGcGCCCGCCu -3'
miRNA:   3'- -UGCCGGgUG-GUGu-UGuGC-CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 145733 0.68 0.541418
Target:  5'- cCGGCCCgcgccccgccGCCACAccCACGGCacccccccCCGCCGc -3'
miRNA:   3'- uGCCGGG----------UGGUGUu-GUGCCG--------GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 108665 0.68 0.541418
Target:  5'- gACGGCCgA-CGCAACGCGccGCCC-CCGg -3'
miRNA:   3'- -UGCCGGgUgGUGUUGUGC--CGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 76081 0.68 0.541418
Target:  5'- -aGGCCCGCCGgGcgaucgagaGCGCGGUcaaggaguacuuCCACCGg -3'
miRNA:   3'- ugCCGGGUGGUgU---------UGUGCCG------------GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 28360 0.68 0.541418
Target:  5'- gGCGGCCCcCCGCGuccccgccCGCGGaCgCGCCGc -3'
miRNA:   3'- -UGCCGGGuGGUGUu-------GUGCC-GgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 72955 0.68 0.540452
Target:  5'- uCGGCCgaucagcgCACCGCAGCcauucaggaggugAUGGCCCACgCGa -3'
miRNA:   3'- uGCCGG--------GUGGUGUUG-------------UGCCGGGUG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.