Results 161 - 180 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 3' | -60.9 | NC_001798.1 | + | 75270 | 0.68 | 0.540452 |
Target: 5'- gGCGGUCCGgcUCGCGGCGCgcgaugccgcccuGGCCCGCgAg -3' miRNA: 3'- -UGCCGGGU--GGUGUUGUG-------------CCGGGUGgU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 95110 | 0.68 | 0.538523 |
Target: 5'- uGCGGCCCgugaugGCCGCGcgcccgauggucguGCugGGCCuCAgCAu -3' miRNA: 3'- -UGCCGGG------UGGUGU--------------UGugCCGG-GUgGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 31853 | 0.69 | 0.53179 |
Target: 5'- uGCcGCCCcCCACGccgcggaggggGCgGCGGCCCGCCc -3' miRNA: 3'- -UGcCGGGuGGUGU-----------UG-UGCCGGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 2864 | 0.69 | 0.53179 |
Target: 5'- gGCGGCCuCGCUGCcGC-CGGCCaCGCgCAg -3' miRNA: 3'- -UGCCGG-GUGGUGuUGuGCCGG-GUG-GU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 363 | 0.69 | 0.53179 |
Target: 5'- --cGCCCGcCCGC-ACACGGuucCCCGCCAc -3' miRNA: 3'- ugcCGGGU-GGUGuUGUGCC---GGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 3867 | 0.69 | 0.522226 |
Target: 5'- cCaGCCCGCCguACAGCACGcGCCCcgggggcgggggGCCGg -3' miRNA: 3'- uGcCGGGUGG--UGUUGUGC-CGGG------------UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 117458 | 0.69 | 0.522226 |
Target: 5'- -gGGCCCcCCcgcugcuagACAACGCGG-CCGCCGu -3' miRNA: 3'- ugCCGGGuGG---------UGUUGUGCCgGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 149324 | 0.69 | 0.522226 |
Target: 5'- aGCGcGCCCACCAgggugcccugguCAaagaGCAUGuuGCCCACCGg -3' miRNA: 3'- -UGC-CGGGUGGU------------GU----UGUGC--CGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 117657 | 0.69 | 0.522226 |
Target: 5'- cCGGCCCugcaacCCGCGgggacGCGCGGCCgGCg- -3' miRNA: 3'- uGCCGGGu-----GGUGU-----UGUGCCGGgUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 2549 | 0.69 | 0.522226 |
Target: 5'- cGCGGCCC-CCGCGGgAgGGgCgGCCGc -3' miRNA: 3'- -UGCCGGGuGGUGUUgUgCCgGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 24341 | 0.69 | 0.521273 |
Target: 5'- gGCGGCgacgccaaCCGCCACGACggcgacgacgcccGCGggaaGCCCGCCGc -3' miRNA: 3'- -UGCCG--------GGUGGUGUUG-------------UGC----CGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 100872 | 0.69 | 0.512729 |
Target: 5'- cUGGCCgGCCugGuCGCGGCCUucuucGCCu -3' miRNA: 3'- uGCCGGgUGGugUuGUGCCGGG-----UGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 41389 | 0.69 | 0.512729 |
Target: 5'- gAUGGCCgGgaGgGACACGGCCCgACCu -3' miRNA: 3'- -UGCCGGgUggUgUUGUGCCGGG-UGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 26355 | 0.69 | 0.512729 |
Target: 5'- gGCGGCCCGgCGgAgcuGCGCGGgCCGCg- -3' miRNA: 3'- -UGCCGGGUgGUgU---UGUGCCgGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 58697 | 0.69 | 0.511783 |
Target: 5'- -aGGgCCGCgGCGGCGCGGgggucgaUCCACCAg -3' miRNA: 3'- ugCCgGGUGgUGUUGUGCC-------GGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 78288 | 0.69 | 0.509894 |
Target: 5'- gGCGG-CCGCCGCGGagcagauaucCGCGGCCCggaaugacccggagGCCAc -3' miRNA: 3'- -UGCCgGGUGGUGUU----------GUGCCGGG--------------UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 129520 | 0.69 | 0.503303 |
Target: 5'- -gGGCCUcgcguucuCCGgGGCGCGGCCCugCu -3' miRNA: 3'- ugCCGGGu-------GGUgUUGUGCCGGGugGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 25497 | 0.69 | 0.503303 |
Target: 5'- -gGGCCCGCUGCGccGCgcgGCGGCCUggaugcGCCAg -3' miRNA: 3'- ugCCGGGUGGUGU--UG---UGCCGGG------UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 96076 | 0.69 | 0.503303 |
Target: 5'- -gGGCCCGCCGCcGCAUcaguccgcgcggGGCgCGCCu -3' miRNA: 3'- ugCCGGGUGGUGuUGUG------------CCGgGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 41915 | 0.69 | 0.503303 |
Target: 5'- uGCGGCCCGgCGaacgGACACGGCCUg--- -3' miRNA: 3'- -UGCCGGGUgGUg---UUGUGCCGGGuggu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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