miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 23622 0.71 0.397128
Target:  5'- cCGGCCCGgacccCCGCGGCgaccGCGGgCCGCCu -3'
miRNA:   3'- uGCCGGGU-----GGUGUUG----UGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 23682 0.71 0.38087
Target:  5'- gUGGCCgGCCGCGACgccACGGgCCGCUu -3'
miRNA:   3'- uGCCGGgUGGUGUUG---UGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 23719 0.66 0.686395
Target:  5'- gGCGGCCCcgGCgGgucgagcuggacgcCGACGCGGCCU-CCGg -3'
miRNA:   3'- -UGCCGGG--UGgU--------------GUUGUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 24341 0.69 0.521273
Target:  5'- gGCGGCgacgccaaCCGCCACGACggcgacgacgcccGCGggaaGCCCGCCGc -3'
miRNA:   3'- -UGCCG--------GGUGGUGUUG-------------UGC----CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 24428 0.67 0.64983
Target:  5'- cCGGCCgACgAgcGCGCGguGCCCGCCGg -3'
miRNA:   3'- uGCCGGgUGgUguUGUGC--CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 24478 0.66 0.708859
Target:  5'- cGCcGCCCuggggcGCCugAGCGcCGcGCCCGCCu -3'
miRNA:   3'- -UGcCGGG------UGGugUUGU-GC-CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 24569 0.66 0.67951
Target:  5'- gGCGGCCgGCgCGCGGagGCGGgCCGCg- -3'
miRNA:   3'- -UGCCGGgUG-GUGUUg-UGCCgGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 24694 0.77 0.187416
Target:  5'- cCGGCCCGCCGCGcccccGCGCccggGGCCCGCgGg -3'
miRNA:   3'- uGCCGGGUGGUGU-----UGUG----CCGGGUGgU- -5'
5327 3' -60.9 NC_001798.1 + 24730 0.71 0.38087
Target:  5'- cGCGGCCgcccCGCCGCAcgccgACGCGcCCCGCCu -3'
miRNA:   3'- -UGCCGG----GUGGUGU-----UGUGCcGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 25014 0.68 0.541418
Target:  5'- cGCGGCCgACuCGCucGC-CGcGCCCGCCu -3'
miRNA:   3'- -UGCCGGgUG-GUGu-UGuGC-CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 25233 0.74 0.284483
Target:  5'- cCGGCCCGCCgagggccccgacccGCAGgGCGGCuggcgCCGCCAg -3'
miRNA:   3'- uGCCGGGUGG--------------UGUUgUGCCG-----GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 25285 0.66 0.659747
Target:  5'- -gGGCCCAgCCACAcGC-CGGCgcccucggCCGCCGc -3'
miRNA:   3'- ugCCGGGU-GGUGU-UGuGCCG--------GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 25402 0.66 0.71853
Target:  5'- cGCGgagcGCCCGCCGgGccugGCGgGGCCC-CCGg -3'
miRNA:   3'- -UGC----CGGGUGGUgU----UGUgCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 25462 0.76 0.196722
Target:  5'- gGCGcGCCCGCCGCcuu-CGGCCCGCUg -3'
miRNA:   3'- -UGC-CGGGUGGUGuuguGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 25497 0.69 0.503303
Target:  5'- -gGGCCCGCUGCGccGCgcgGCGGCCUggaugcGCCAg -3'
miRNA:   3'- ugCCGGGUGGUGU--UG---UGCCGGG------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 25668 0.72 0.372119
Target:  5'- gGCGGCCCuggGCAACcggcucuGCgGGCCCGCCAc -3'
miRNA:   3'- -UGCCGGGuggUGUUG-------UG-CCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 25865 0.7 0.4755
Target:  5'- cCGuGCgCGCCGCGGacUGGCCCGCCGa -3'
miRNA:   3'- uGC-CGgGUGGUGUUguGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 25900 0.67 0.6399
Target:  5'- gUGGUCuCGCgGCAGCACG-CCUACCu -3'
miRNA:   3'- uGCCGG-GUGgUGUUGUGCcGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 26201 0.66 0.68934
Target:  5'- cCGGgCCGCCGCcucgGGCGCGGgCgaCGCCAu -3'
miRNA:   3'- uGCCgGGUGGUG----UUGUGCCgG--GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 26269 0.66 0.71853
Target:  5'- gUGGCUCAcCCACAACGCcaGCCUGCg- -3'
miRNA:   3'- uGCCGGGU-GGUGUUGUGc-CGGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.