miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 26303 0.66 0.68934
Target:  5'- -gGGCgCGCCGCu--GCGGCCCGuCUAc -3'
miRNA:   3'- ugCCGgGUGGUGuugUGCCGGGU-GGU- -5'
5327 3' -60.9 NC_001798.1 + 26355 0.69 0.512729
Target:  5'- gGCGGCCCGgCGgAgcuGCGCGGgCCGCg- -3'
miRNA:   3'- -UGCCGGGUgGUgU---UGUGCCgGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 26424 0.66 0.687378
Target:  5'- gACGcGCCCccgcuggugcugcGCgACGACGCggacgcgGGCCCGCCc -3'
miRNA:   3'- -UGC-CGGG-------------UGgUGUUGUG-------CCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 26550 0.68 0.590306
Target:  5'- -gGGaCCGCCGCGGgGCuGGCCaCGCCGc -3'
miRNA:   3'- ugCCgGGUGGUGUUgUG-CCGG-GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 27636 0.67 0.620029
Target:  5'- --cGCCCGCCGC--CGCcGCCCGCCu -3'
miRNA:   3'- ugcCGGGUGGUGuuGUGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 27754 0.7 0.430951
Target:  5'- -gGGCCC---GCAACACGGCCCgggcugcgcacGCCAg -3'
miRNA:   3'- ugCCGGGuggUGUUGUGCCGGG-----------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 28309 0.68 0.550131
Target:  5'- uACGGCUgcgCACCACGACGgaguaccUGGCgCGCCu -3'
miRNA:   3'- -UGCCGG---GUGGUGUUGU-------GCCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 28360 0.68 0.541418
Target:  5'- gGCGGCCCcCCGCGuccccgccCGCGGaCgCGCCGc -3'
miRNA:   3'- -UGCCGGGuGGUGUu-------GUGCC-GgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 28649 0.66 0.659747
Target:  5'- -gGGCCgACCGCGACcgguucCGGCgCCGCg- -3'
miRNA:   3'- ugCCGGgUGGUGUUGu-----GCCG-GGUGgu -5'
5327 3' -60.9 NC_001798.1 + 28797 0.66 0.659747
Target:  5'- gGCGGCgcgcggguccuCCGCCGCcGCG-GGCCCggGCCGu -3'
miRNA:   3'- -UGCCG-----------GGUGGUGuUGUgCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 30422 0.72 0.334828
Target:  5'- cGCGGCCaCGCCccCGGCcCGGCCC-CCGg -3'
miRNA:   3'- -UGCCGG-GUGGu-GUUGuGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 31284 0.7 0.448483
Target:  5'- gGCGGCCCugC-CGuCGCGGCCgucguGCCGa -3'
miRNA:   3'- -UGCCGGGugGuGUuGUGCCGGg----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 31572 0.68 0.569642
Target:  5'- -gGGCgCGCCGCGcgcccccGCGCGGCCguCGCCc -3'
miRNA:   3'- ugCCGgGUGGUGU-------UGUGCCGG--GUGGu -5'
5327 3' -60.9 NC_001798.1 + 31664 0.66 0.669643
Target:  5'- cGCGGCCgGgC-CcGCGCcGCCCGCCGu -3'
miRNA:   3'- -UGCCGGgUgGuGuUGUGcCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 31853 0.69 0.53179
Target:  5'- uGCcGCCCcCCACGccgcggaggggGCgGCGGCCCGCCc -3'
miRNA:   3'- -UGcCGGGuGGUGU-----------UG-UGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 32027 0.66 0.699126
Target:  5'- uCGGgCgACCGCGGcCACGGgCCGCUc -3'
miRNA:   3'- uGCCgGgUGGUGUU-GUGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 32366 0.66 0.677539
Target:  5'- gGCGGCCCcgagcccggggcCCGCGACcCGGCgCCcgGCCu -3'
miRNA:   3'- -UGCCGGGu-----------GGUGUUGuGCCG-GG--UGGu -5'
5327 3' -60.9 NC_001798.1 + 32560 0.71 0.405423
Target:  5'- gGCGGaCCUGCUGCGGgcCGCGGCCC-CCGc -3'
miRNA:   3'- -UGCC-GGGUGGUGUU--GUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 33637 0.66 0.659747
Target:  5'- gGC-GCCCACCcCGcccGCACaccuGCCCGCCAc -3'
miRNA:   3'- -UGcCGGGUGGuGU---UGUGc---CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 33859 1.07 0.001364
Target:  5'- cACGGCCCACCACAACACGGCCCACCAc -3'
miRNA:   3'- -UGCCGGGUGGUGUUGUGCCGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.