miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 33938 0.66 0.669643
Target:  5'- cGCGuGCCUACCuuucccuaGCGGCccCGGCCC-CCGg -3'
miRNA:   3'- -UGC-CGGGUGG--------UGUUGu-GCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 34784 0.71 0.422337
Target:  5'- cGCGGaaaCGCCGcCGGCGCGGCCCgggGCCc -3'
miRNA:   3'- -UGCCgg-GUGGU-GUUGUGCCGGG---UGGu -5'
5327 3' -60.9 NC_001798.1 + 35007 0.68 0.570622
Target:  5'- -gGGCgCACCuCGGCGgccaagcccCGGCCCGCCc -3'
miRNA:   3'- ugCCGgGUGGuGUUGU---------GCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 35460 0.7 0.430951
Target:  5'- cGCGGCCCGuCUGCuggccCGCGGCCCGuCUg -3'
miRNA:   3'- -UGCCGGGU-GGUGuu---GUGCCGGGU-GGu -5'
5327 3' -60.9 NC_001798.1 + 35536 0.66 0.669643
Target:  5'- cGCGGCCgGCgCGgGGCGuugcCGGCCCgGCCc -3'
miRNA:   3'- -UGCCGGgUG-GUgUUGU----GCCGGG-UGGu -5'
5327 3' -60.9 NC_001798.1 + 35773 0.66 0.708859
Target:  5'- cCGGuCCCGCuCcCAACGCcccuGGCCCGCgAg -3'
miRNA:   3'- uGCC-GGGUG-GuGUUGUG----CCGGGUGgU- -5'
5327 3' -60.9 NC_001798.1 + 36490 0.7 0.4755
Target:  5'- -gGGCgCCGgCGCGACGCGGgCgGCCGg -3'
miRNA:   3'- ugCCG-GGUgGUGUUGUGCCgGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 37378 0.66 0.71853
Target:  5'- -gGGCUaCACCGCcguCGCGGCCacgggCACCGu -3'
miRNA:   3'- ugCCGG-GUGGUGuu-GUGCCGG-----GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 37496 0.7 0.439667
Target:  5'- -gGGCCCA--AC-GCGCGGCCCGCUg -3'
miRNA:   3'- ugCCGGGUggUGuUGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 39103 0.74 0.25535
Target:  5'- cAUGGCCUugGCUGuCGACGCGGCCCGCgGg -3'
miRNA:   3'- -UGCCGGG--UGGU-GUUGUGCCGGGUGgU- -5'
5327 3' -60.9 NC_001798.1 + 39676 0.68 0.551102
Target:  5'- cCGGCCCcgGCgGCGACcucGCcGCCCGCCu -3'
miRNA:   3'- uGCCGGG--UGgUGUUG---UGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 41389 0.69 0.512729
Target:  5'- gAUGGCCgGgaGgGACACGGCCCgACCu -3'
miRNA:   3'- -UGCCGGgUggUgUUGUGCCGGG-UGGu -5'
5327 3' -60.9 NC_001798.1 + 41664 0.67 0.64983
Target:  5'- aGCGGaCCGCgaGCAugGCGuGCCCGCa- -3'
miRNA:   3'- -UGCCgGGUGg-UGUugUGC-CGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 41915 0.69 0.503303
Target:  5'- uGCGGCCCGgCGaacgGACACGGCCUg--- -3'
miRNA:   3'- -UGCCGGGUgGUg---UUGUGCCGGGuggu -5'
5327 3' -60.9 NC_001798.1 + 42407 0.69 0.493954
Target:  5'- uACGGCCU-CCACGAaguCGCGGUCCAaCAg -3'
miRNA:   3'- -UGCCGGGuGGUGUU---GUGCCGGGUgGU- -5'
5327 3' -60.9 NC_001798.1 + 45176 0.66 0.67951
Target:  5'- -gGGCuCCACCAuCGACGgGGCCgUugCGg -3'
miRNA:   3'- ugCCG-GGUGGU-GUUGUgCCGG-GugGU- -5'
5327 3' -60.9 NC_001798.1 + 45812 0.68 0.590306
Target:  5'- cUGGCCCGaCGCGagGCGCGGUCUagauGCCAg -3'
miRNA:   3'- uGCCGGGUgGUGU--UGUGCCGGG----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 46743 0.72 0.372909
Target:  5'- -aGGCCCAgaGaGACGCGGCCCACg- -3'
miRNA:   3'- ugCCGGGUggUgUUGUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 47659 0.66 0.68934
Target:  5'- gACGacuUCCGCCGCGGCGCuGGCCCGa-- -3'
miRNA:   3'- -UGCc--GGGUGGUGUUGUG-CCGGGUggu -5'
5327 3' -60.9 NC_001798.1 + 48384 0.68 0.570622
Target:  5'- -gGGCgugCCGCCGCGaccGCACGGgccCCCGCCc -3'
miRNA:   3'- ugCCG---GGUGGUGU---UGUGCC---GGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.