miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 49309 0.68 0.560839
Target:  5'- uCGcGCCCACgGCGACgugGCGuuccccacccuGCCCGCCAc -3'
miRNA:   3'- uGC-CGGGUGgUGUUG---UGC-----------CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 51180 0.66 0.67951
Target:  5'- -aGGCCCggGCgGCGGCGCcccCCCGCCGg -3'
miRNA:   3'- ugCCGGG--UGgUGUUGUGcc-GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 51431 0.7 0.466402
Target:  5'- gACGGCC--CCGgGGCGCGGCCUuCCGc -3'
miRNA:   3'- -UGCCGGguGGUgUUGUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 51906 0.66 0.68934
Target:  5'- cGCGaGCCuCACgGCGuuGCGGCCCguggggGCCGc -3'
miRNA:   3'- -UGC-CGG-GUGgUGUugUGCCGGG------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 52350 0.69 0.497684
Target:  5'- gGCGGCCgAgCACGAggcgcugggcgacacCGCGGCgCGCCGc -3'
miRNA:   3'- -UGCCGGgUgGUGUU---------------GUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 52428 0.7 0.465497
Target:  5'- cGCGGCCguguacgCGCUGC-ACACGGCCCuggcgACCGu -3'
miRNA:   3'- -UGCCGG-------GUGGUGuUGUGCCGGG-----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 52600 0.66 0.68934
Target:  5'- gUGGCCCugGCCGCGuuugACggcgggucgACGGCCC-CCGa -3'
miRNA:   3'- uGCCGGG--UGGUGU----UG---------UGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 52992 0.71 0.405423
Target:  5'- gGCGGCCCGCCACGccCAUaGGCgCCuccCCAu -3'
miRNA:   3'- -UGCCGGGUGGUGUu-GUG-CCG-GGu--GGU- -5'
5327 3' -60.9 NC_001798.1 + 53324 0.66 0.67951
Target:  5'- gGCGGCgcggCACCAUAACACcGUCC-CCGa -3'
miRNA:   3'- -UGCCGg---GUGGUGUUGUGcCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 53578 0.68 0.580447
Target:  5'- uGCGGCCCACCcugcucccgaaGCuGCugGuGCgCGCCc -3'
miRNA:   3'- -UGCCGGGUGG-----------UGuUGugC-CGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 53660 0.74 0.267437
Target:  5'- gGCGGggUugCGCGACGCGGCCCACa- -3'
miRNA:   3'- -UGCCggGugGUGUUGUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 53927 0.71 0.388131
Target:  5'- -gGGCCCagcggcACCACGggcucgaugcaguGCAUGGCCCugCGg -3'
miRNA:   3'- ugCCGGG------UGGUGU-------------UGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 53990 0.71 0.397128
Target:  5'- cUGGgCCACCugAcGCGCcuGGCCCACCu -3'
miRNA:   3'- uGCCgGGUGGugU-UGUG--CCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 54375 0.74 0.273652
Target:  5'- cCGGCCCACCggggggccGCGGCGCGGUCgGCgGg -3'
miRNA:   3'- uGCCGGGUGG--------UGUUGUGCCGGgUGgU- -5'
5327 3' -60.9 NC_001798.1 + 54429 0.68 0.590306
Target:  5'- aACGGaCCCGgCGCGACaACGcaccCCCGCCGc -3'
miRNA:   3'- -UGCC-GGGUgGUGUUG-UGCc---GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 54531 0.73 0.306467
Target:  5'- cCGaGCCC-CCGCAcgucgACGCGGCCgACCGg -3'
miRNA:   3'- uGC-CGGGuGGUGU-----UGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 54567 0.7 0.466402
Target:  5'- cCGaGCCCugCGcCGGC-CGGCCgGCCAc -3'
miRNA:   3'- uGC-CGGGugGU-GUUGuGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 54660 0.75 0.243714
Target:  5'- aGCGGCCggcaGCCGCGGCGCG-CCCGCUc -3'
miRNA:   3'- -UGCCGGg---UGGUGUUGUGCcGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 55956 0.69 0.493954
Target:  5'- -aGGCCacgGCCGgAACACGaGCCCGCg- -3'
miRNA:   3'- ugCCGGg--UGGUgUUGUGC-CGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 57134 0.69 0.48192
Target:  5'- aGCGGCCCgacgaccgaguacaGCCGCgGGCugGcGCCCggGCCGg -3'
miRNA:   3'- -UGCCGGG--------------UGGUG-UUGugC-CGGG--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.