miRNA display CGI


Results 121 - 140 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 57677 0.71 0.413827
Target:  5'- -aGGCCCACgGCua---GGCCCACCc -3'
miRNA:   3'- ugCCGGGUGgUGuugugCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 57748 0.67 0.629964
Target:  5'- gGCGcGCCCGgCGCAGCGaggaggguugcCGGaaaCCACCGc -3'
miRNA:   3'- -UGC-CGGGUgGUGUUGU-----------GCCg--GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 58024 0.79 0.12925
Target:  5'- cCGGCUCGCCGCcaucCGCGGCCgCACCAg -3'
miRNA:   3'- uGCCGGGUGGUGuu--GUGCCGG-GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 58328 0.77 0.161789
Target:  5'- -aGGCCCGCCGCcGCGUGGCCC-CCGa -3'
miRNA:   3'- ugCCGGGUGGUGuUGUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 58480 0.67 0.620029
Target:  5'- uGCGGCCCcgucGCCGCAGaccCGCGGagaUCGCUg -3'
miRNA:   3'- -UGCCGGG----UGGUGUU---GUGCCg--GGUGGu -5'
5327 3' -60.9 NC_001798.1 + 58597 0.66 0.71853
Target:  5'- cACGGCCgggugacuCGCCAUG--GCGGCCgCGCCc -3'
miRNA:   3'- -UGCCGG--------GUGGUGUugUGCCGG-GUGGu -5'
5327 3' -60.9 NC_001798.1 + 58697 0.69 0.511783
Target:  5'- -aGGgCCGCgGCGGCGCGGgggucgaUCCACCAg -3'
miRNA:   3'- ugCCgGGUGgUGUUGUGCC-------GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 58829 0.68 0.570622
Target:  5'- uCGGCCagCACCAgCAGCgccgcguagGCGGCCCcgagcGCCAg -3'
miRNA:   3'- uGCCGG--GUGGU-GUUG---------UGCCGGG-----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 61705 0.66 0.659747
Target:  5'- cUGGCCCG-CACG--ACGGCCCaguGCCGc -3'
miRNA:   3'- uGCCGGGUgGUGUugUGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 61859 0.7 0.439667
Target:  5'- cGCGGgCCGCCGgccCAGCccgGCGGCCC-CCu -3'
miRNA:   3'- -UGCCgGGUGGU---GUUG---UGCCGGGuGGu -5'
5327 3' -60.9 NC_001798.1 + 61908 0.68 0.560839
Target:  5'- cCGGCCCugCGCc---UGGCUCACCu -3'
miRNA:   3'- uGCCGGGugGUGuuguGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 62275 0.69 0.493954
Target:  5'- -aGGCCCGCCGg---GCGGCCCGgCGg -3'
miRNA:   3'- ugCCGGGUGGUguugUGCCGGGUgGU- -5'
5327 3' -60.9 NC_001798.1 + 63732 0.7 0.448483
Target:  5'- uGCGGgCCACauaGGCGCGGCgCGCCu -3'
miRNA:   3'- -UGCCgGGUGgugUUGUGCCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 65005 0.67 0.610104
Target:  5'- -aGGCCCAUCuugaGGCACgccgugugcaGGCCCugCAu -3'
miRNA:   3'- ugCCGGGUGGug--UUGUG----------CCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 67298 0.68 0.584386
Target:  5'- -gGGCCCgagguuccgccgagcGCCACGACgGCGGuucggccaucCCCGCCGg -3'
miRNA:   3'- ugCCGGG---------------UGGUGUUG-UGCC----------GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 68226 0.75 0.243714
Target:  5'- -aGGCCCGCCACcccgcCGCGcGCCaCACCAc -3'
miRNA:   3'- ugCCGGGUGGUGuu---GUGC-CGG-GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 68636 0.66 0.71853
Target:  5'- cGCGgacGCCCGCCGCGcCGCGGUCaGCgAg -3'
miRNA:   3'- -UGC---CGGGUGGUGUuGUGCCGGgUGgU- -5'
5327 3' -60.9 NC_001798.1 + 68940 0.7 0.466402
Target:  5'- cCGGUCCAgCCGCGcCcCGGCCCGCg- -3'
miRNA:   3'- uGCCGGGU-GGUGUuGuGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 69067 0.73 0.299671
Target:  5'- -aGGCCCGCgcgcgCGCAGCcgcucuCGGCCCGCCc -3'
miRNA:   3'- ugCCGGGUG-----GUGUUGu-----GCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 70578 0.73 0.313381
Target:  5'- gGCGGCCCugggGCCGguGCGCG-UCCGCCAg -3'
miRNA:   3'- -UGCCGGG----UGGUguUGUGCcGGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.