miRNA display CGI


Results 141 - 160 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 71711 0.66 0.659747
Target:  5'- gACGGCCgagCGCCGCuucAGCGcCGGCCaGCCc -3'
miRNA:   3'- -UGCCGG---GUGGUG---UUGU-GCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 71873 0.71 0.405423
Target:  5'- uCGGUUCACCugGcCGCGGC-CACCAa -3'
miRNA:   3'- uGCCGGGUGGugUuGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 71996 0.66 0.67951
Target:  5'- -aGGgCCACgUGCAACGCuGCCUACCu -3'
miRNA:   3'- ugCCgGGUG-GUGUUGUGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 72231 0.66 0.708859
Target:  5'- -gGGCCguCgaGCAGCuGCGGCCCGCg- -3'
miRNA:   3'- ugCCGGguGg-UGUUG-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 72840 0.71 0.405423
Target:  5'- -aGGCCgCACgCGCGGCACGGgCC-CCGa -3'
miRNA:   3'- ugCCGG-GUG-GUGUUGUGCCgGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 72955 0.68 0.540452
Target:  5'- uCGGCCgaucagcgCACCGCAGCcauucaggaggugAUGGCCCACgCGa -3'
miRNA:   3'- uGCCGG--------GUGGUGUUG-------------UGCCGGGUG-GU- -5'
5327 3' -60.9 NC_001798.1 + 73310 0.7 0.439667
Target:  5'- cCGGCCCA-CAgGACACgcaGGCCCGCg- -3'
miRNA:   3'- uGCCGGGUgGUgUUGUG---CCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 73344 0.68 0.590306
Target:  5'- gACGcGCCCggcggGCCGCGAgACGGUCCcuugGCCc -3'
miRNA:   3'- -UGC-CGGG-----UGGUGUUgUGCCGGG----UGGu -5'
5327 3' -60.9 NC_001798.1 + 74199 0.7 0.448483
Target:  5'- uCGGCCC-CCugGGCAUggGGCuCUACCGg -3'
miRNA:   3'- uGCCGGGuGGugUUGUG--CCG-GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 74236 0.71 0.395483
Target:  5'- cACGGCCUAUCuguuugacccGCACGGCCUGCCc -3'
miRNA:   3'- -UGCCGGGUGGugu-------UGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 74413 0.71 0.38087
Target:  5'- gGCGGaCCUgACCGC--CGCGGCCCugCAc -3'
miRNA:   3'- -UGCC-GGG-UGGUGuuGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 74652 0.67 0.600194
Target:  5'- -aGGCCCcCCGgGGgGCcucgGGCCCACCc -3'
miRNA:   3'- ugCCGGGuGGUgUUgUG----CCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 74765 0.72 0.365061
Target:  5'- uCGGCCCcggacGCCGCGGCcucgGGUCCACCGc -3'
miRNA:   3'- uGCCGGG-----UGGUGUUGug--CCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 74931 0.71 0.413827
Target:  5'- cCGGCCCACCugGAC----CCCACCGu -3'
miRNA:   3'- uGCCGGGUGGugUUGugccGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 74983 0.72 0.372909
Target:  5'- -aGGCCCGCCccCAAgGCcccGCCCGCCAa -3'
miRNA:   3'- ugCCGGGUGGu-GUUgUGc--CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 75270 0.68 0.540452
Target:  5'- gGCGGUCCGgcUCGCGGCGCgcgaugccgcccuGGCCCGCgAg -3'
miRNA:   3'- -UGCCGGGU--GGUGUUGUG-------------CCGGGUGgU- -5'
5327 3' -60.9 NC_001798.1 + 75463 0.72 0.357329
Target:  5'- gUGGCCgGCC-CGGcCGCGGCCCugCu -3'
miRNA:   3'- uGCCGGgUGGuGUU-GUGCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 75985 0.68 0.589318
Target:  5'- cCGuGCCCGCCgccccgggcgccgGCGGCAgGGCCCcguGCCc -3'
miRNA:   3'- uGC-CGGGUGG-------------UGUUGUgCCGGG---UGGu -5'
5327 3' -60.9 NC_001798.1 + 76081 0.68 0.541418
Target:  5'- -aGGCCCGCCGgGcgaucgagaGCGCGGUcaaggaguacuuCCACCGg -3'
miRNA:   3'- ugCCGGGUGGUgU---------UGUGCCG------------GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 76562 0.7 0.448483
Target:  5'- cGCGGCCUucguCCcgGCGAC-CGGCCCcgcGCCGu -3'
miRNA:   3'- -UGCCGGGu---GG--UGUUGuGCCGGG---UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.