miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 131545 0.66 0.71853
Target:  5'- gACGa-CgACCGCGACGCGGgCCGCUg -3'
miRNA:   3'- -UGCcgGgUGGUGUUGUGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 131068 0.79 0.132543
Target:  5'- cCGcGCCCACCGCGgcguACACGGCCgcCGCCAg -3'
miRNA:   3'- uGC-CGGGUGGUGU----UGUGCCGG--GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 131011 0.67 0.620029
Target:  5'- uACGGgCCGCCGCcaGGCgACGGgCCGCa- -3'
miRNA:   3'- -UGCCgGGUGGUG--UUG-UGCCgGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 130539 0.72 0.342212
Target:  5'- gAUGGCCC-CgAgGugGgGGCCCACCAa -3'
miRNA:   3'- -UGCCGGGuGgUgUugUgCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 130252 0.71 0.397128
Target:  5'- gGCGGCCCGCCACGccuagaaccgcGCAUGGagCugCGu -3'
miRNA:   3'- -UGCCGGGUGGUGU-----------UGUGCCggGugGU- -5'
5327 3' -60.9 NC_001798.1 + 129740 0.68 0.580447
Target:  5'- aACGGCgggACCcCGACGUGGCCCGCCc -3'
miRNA:   3'- -UGCCGgg-UGGuGUUGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 129520 0.69 0.503303
Target:  5'- -gGGCCUcgcguucuCCGgGGCGCGGCCCugCu -3'
miRNA:   3'- ugCCGGGu-------GGUgUUGUGCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 128852 0.68 0.554991
Target:  5'- cGCGGCCU-CCGCGuacgaggaccugaugGCGCGGCgaUCGCCGg -3'
miRNA:   3'- -UGCCGGGuGGUGU---------------UGUGCCG--GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 128402 0.66 0.669643
Target:  5'- -gGGCCCugCuuCGGCGgGGCCUgacgACCGc -3'
miRNA:   3'- ugCCGGGugGu-GUUGUgCCGGG----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 128147 0.67 0.64983
Target:  5'- uCGaGCgCCACCu--GCGCGGCCUGCUg -3'
miRNA:   3'- uGC-CG-GGUGGuguUGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 127975 0.71 0.397128
Target:  5'- cCGGCCCucucugagGCCuCAuC-CGGCCCGCCAa -3'
miRNA:   3'- uGCCGGG--------UGGuGUuGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 127743 0.68 0.551102
Target:  5'- uGCGG-CCGCCGCAACAccCGGC--GCCAa -3'
miRNA:   3'- -UGCCgGGUGGUGUUGU--GCCGggUGGU- -5'
5327 3' -60.9 NC_001798.1 + 126894 0.66 0.703026
Target:  5'- gACGGCCCuccACCACugcuucacagaccuGGCGCGcGCCgugguguuccugaaCACCAg -3'
miRNA:   3'- -UGCCGGG---UGGUG--------------UUGUGC-CGG--------------GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 126745 0.69 0.484685
Target:  5'- cGCGGCCgCAcCCACGACauccGCGGCUuuauCACCc -3'
miRNA:   3'- -UGCCGG-GU-GGUGUUG----UGCCGG----GUGGu -5'
5327 3' -60.9 NC_001798.1 + 125885 0.69 0.483763
Target:  5'- gGCGGCCCACUugGaauuggagGCGCGGCuaaagucCCGCg- -3'
miRNA:   3'- -UGCCGGGUGGugU--------UGUGCCG-------GGUGgu -5'
5327 3' -60.9 NC_001798.1 + 125725 0.74 0.28904
Target:  5'- gGCGGCgagaugagccgagaCGCCGCcACGCGGCCCugCGc -3'
miRNA:   3'- -UGCCGg-------------GUGGUGuUGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 125553 0.67 0.6399
Target:  5'- -aGGCCCGCCG--ACGCcucgucgacGCCCACCu -3'
miRNA:   3'- ugCCGGGUGGUguUGUGc--------CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 124282 0.78 0.146502
Target:  5'- gGCGaCCCGCCGCccgcgcauCACGGCCCACCu -3'
miRNA:   3'- -UGCcGGGUGGUGuu------GUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 124192 0.67 0.620029
Target:  5'- uAUGGCCCAgCGCAcCcUGGCCguCCGg -3'
miRNA:   3'- -UGCCGGGUgGUGUuGuGCCGGguGGU- -5'
5327 3' -60.9 NC_001798.1 + 124085 0.71 0.388943
Target:  5'- gGCGGCgCCugCGCccCgACGGCCCACa- -3'
miRNA:   3'- -UGCCG-GGugGUGuuG-UGCCGGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.