miRNA display CGI


Results 61 - 80 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 123881 0.71 0.38087
Target:  5'- gACGGCgCCuACCugGuacccacggACACGGCCC-CCGa -3'
miRNA:   3'- -UGCCG-GG-UGGugU---------UGUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 123401 0.71 0.397128
Target:  5'- -aGGCCCcCCGgGAgcCGCGGCcCCGCCGg -3'
miRNA:   3'- ugCCGGGuGGUgUU--GUGCCG-GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 122628 0.71 0.38087
Target:  5'- -gGGCCgCGCUcCAAgGCGGCCCGCgCAu -3'
miRNA:   3'- ugCCGG-GUGGuGUUgUGCCGGGUG-GU- -5'
5327 3' -60.9 NC_001798.1 + 122413 0.67 0.597225
Target:  5'- cACGGCCCugacggaggccuguGCCGCcgAGCGCGucgugcgccCCCACCAg -3'
miRNA:   3'- -UGCCGGG--------------UGGUG--UUGUGCc--------GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 122246 0.7 0.4755
Target:  5'- cUGGCCgGCgGCGAC-CGGCCCgACUg -3'
miRNA:   3'- uGCCGGgUGgUGUUGuGCCGGG-UGGu -5'
5327 3' -60.9 NC_001798.1 + 122015 0.75 0.249476
Target:  5'- -gGGCuCCGCCAgGGCGCccuGGUCCACCAg -3'
miRNA:   3'- ugCCG-GGUGGUgUUGUG---CCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 121970 0.68 0.570622
Target:  5'- cCGGUCCGCgCGCGccccaagcACGCGGCCU-CCGg -3'
miRNA:   3'- uGCCGGGUG-GUGU--------UGUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 121858 0.72 0.365061
Target:  5'- cACGGCCCcgggagGCGACACGGC-CACCGc -3'
miRNA:   3'- -UGCCGGGugg---UGUUGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 121703 0.81 0.094996
Target:  5'- cGCGGCucccgCCGCCGCGACggaggcgGCGGCCCACCu -3'
miRNA:   3'- -UGCCG-----GGUGGUGUUG-------UGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 119457 0.72 0.372119
Target:  5'- gACGGCgCCGCCguugugcaauccgGCGACAUGGCCCcgguuauCCGc -3'
miRNA:   3'- -UGCCG-GGUGG-------------UGUUGUGCCGGGu------GGU- -5'
5327 3' -60.9 NC_001798.1 + 118511 0.67 0.599203
Target:  5'- cCGGCCCucCCGCAcccccGCguuccggugucucGCGGCCCggcGCCAu -3'
miRNA:   3'- uGCCGGGu-GGUGU-----UG-------------UGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 117832 0.68 0.560839
Target:  5'- -gGGCCUAUCACcucAACGgGGCCuCGCCc -3'
miRNA:   3'- ugCCGGGUGGUG---UUGUgCCGG-GUGGu -5'
5327 3' -60.9 NC_001798.1 + 117759 0.68 0.570622
Target:  5'- gGCGcGCCCuuCGCGGcCACGGCCaACCc -3'
miRNA:   3'- -UGC-CGGGugGUGUU-GUGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 117657 0.69 0.522226
Target:  5'- cCGGCCCugcaacCCGCGgggacGCGCGGCCgGCg- -3'
miRNA:   3'- uGCCGGGu-----GGUGU-----UGUGCCGGgUGgu -5'
5327 3' -60.9 NC_001798.1 + 117458 0.69 0.522226
Target:  5'- -gGGCCCcCCcgcugcuagACAACGCGG-CCGCCGu -3'
miRNA:   3'- ugCCGGGuGG---------UGUUGUGCCgGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 116989 0.71 0.397128
Target:  5'- cCGGCCCugCGCGACcUGGCgCGCg- -3'
miRNA:   3'- uGCCGGGugGUGUUGuGCCGgGUGgu -5'
5327 3' -60.9 NC_001798.1 + 116874 0.67 0.600194
Target:  5'- cAUGGCCC-CC-CAGCACcuGGaCCaCACCAu -3'
miRNA:   3'- -UGCCGGGuGGuGUUGUG--CC-GG-GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 116428 0.73 0.292991
Target:  5'- cGCGGCcgacgCCGCCgACGAC-CGGCCgCACCGg -3'
miRNA:   3'- -UGCCG-----GGUGG-UGUUGuGCCGG-GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 116374 0.74 0.273652
Target:  5'- gACGGCCgacuuuaACCGCAACgACGGCCgGCUg -3'
miRNA:   3'- -UGCCGGg------UGGUGUUG-UGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 116276 0.72 0.372909
Target:  5'- gACGGCCUuauGCgAC-ACGCGGCCCuggACCGc -3'
miRNA:   3'- -UGCCGGG---UGgUGuUGUGCCGGG---UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.