miRNA display CGI


Results 81 - 100 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 116138 0.67 0.64983
Target:  5'- gUGGCCCACguCGAgGCccuGGCCCAgCu -3'
miRNA:   3'- uGCCGGGUGguGUUgUG---CCGGGUgGu -5'
5327 3' -60.9 NC_001798.1 + 114569 0.72 0.368187
Target:  5'- -aGGCCguCCugggggcguuugagcGCGGCACGGCCgACCAg -3'
miRNA:   3'- ugCCGGguGG---------------UGUUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 114353 0.66 0.708859
Target:  5'- -aGGUCCACCAgccccucaucgcCcGCgACGGCCCGCa- -3'
miRNA:   3'- ugCCGGGUGGU------------GuUG-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 114093 0.66 0.67951
Target:  5'- cCGGUaCGCCGCGGCcaucCuGCCCACCGg -3'
miRNA:   3'- uGCCGgGUGGUGUUGu---GcCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 113504 0.71 0.405423
Target:  5'- cGCGGCCCugugcgcCCugGugGCGGCCgC-CCAu -3'
miRNA:   3'- -UGCCGGGu------GGugUugUGCCGG-GuGGU- -5'
5327 3' -60.9 NC_001798.1 + 112628 0.7 0.457395
Target:  5'- gACGGCuuCCGUCAC-GCACGGCCgGCCu -3'
miRNA:   3'- -UGCCG--GGUGGUGuUGUGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 110911 0.71 0.397128
Target:  5'- uGCGGCCaGCCGCccccGC-CGGCCCGCg- -3'
miRNA:   3'- -UGCCGGgUGGUGu---UGuGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 110354 0.67 0.64983
Target:  5'- cACGGaugCCACCcaACAGCAgcUGGCCCagggGCCGg -3'
miRNA:   3'- -UGCCg--GGUGG--UGUUGU--GCCGGG----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 110061 0.73 0.313381
Target:  5'- aGCGGCCCGuCgCACAACGCGGagCC-CCGg -3'
miRNA:   3'- -UGCCGGGU-G-GUGUUGUGCCg-GGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 109727 0.71 0.397128
Target:  5'- aACGcGCCCGCCGgGGCcuccucauaaccACGGCCCugUg -3'
miRNA:   3'- -UGC-CGGGUGGUgUUG------------UGCCGGGugGu -5'
5327 3' -60.9 NC_001798.1 + 109644 0.66 0.669643
Target:  5'- gAUGGUCCGCCgagcgcuguuuuACGcCACGGCCguCCu -3'
miRNA:   3'- -UGCCGGGUGG------------UGUuGUGCCGGguGGu -5'
5327 3' -60.9 NC_001798.1 + 109554 0.81 0.100253
Target:  5'- cGCGGCCUAUgGCGcgguggccccgaGCGCGGCCCGCCu -3'
miRNA:   3'- -UGCCGGGUGgUGU------------UGUGCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 109434 0.75 0.232523
Target:  5'- gGCGGCCCGCCuGCGGCuggaGGCgCGCCu -3'
miRNA:   3'- -UGCCGGGUGG-UGUUGug--CCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 109339 0.68 0.580447
Target:  5'- uUGGCCCACuCGCGcguGC-UGGCCgGCCu -3'
miRNA:   3'- uGCCGGGUG-GUGU---UGuGCCGGgUGGu -5'
5327 3' -60.9 NC_001798.1 + 109290 0.74 0.261336
Target:  5'- cGCGGCCCAcgcCCACGACGCGaUUCGCCu -3'
miRNA:   3'- -UGCCGGGU---GGUGUUGUGCcGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 108665 0.68 0.541418
Target:  5'- gACGGCCgA-CGCAACGCGccGCCC-CCGg -3'
miRNA:   3'- -UGCCGGgUgGUGUUGUGC--CGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 108570 0.69 0.493023
Target:  5'- uGCGGUCCcggGCCugGGuaacauuCGCGGCCgCGCCGg -3'
miRNA:   3'- -UGCCGGG---UGGugUU-------GUGCCGG-GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 108450 0.68 0.590306
Target:  5'- uCGGCCgGCCucGgAACGCGaGCCUGCCc -3'
miRNA:   3'- uGCCGGgUGG--UgUUGUGC-CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 106701 0.66 0.663708
Target:  5'- -gGGCCUACCgACGgccGCGCGGCgucccguccuagccaUCGCCAg -3'
miRNA:   3'- ugCCGGGUGG-UGU---UGUGCCG---------------GGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 105396 0.68 0.541418
Target:  5'- gGCGGCguucuccagggCCGCCGCGGcCGCGGUgCGCUg -3'
miRNA:   3'- -UGCCG-----------GGUGGUGUU-GUGCCGgGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.