miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 105264 0.66 0.68934
Target:  5'- cGCGGCauCCGCCucuuCGGcCGCGG-CCGCCGc -3'
miRNA:   3'- -UGCCG--GGUGGu---GUU-GUGCCgGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 105079 0.66 0.68934
Target:  5'- gACGaaCCCGCgGCccCGCGGCCCGCg- -3'
miRNA:   3'- -UGCc-GGGUGgUGuuGUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 104913 0.71 0.38087
Target:  5'- cUGGCCCACgUACAGC-CGGCCgCACg- -3'
miRNA:   3'- uGCCGGGUG-GUGUUGuGCCGG-GUGgu -5'
5327 3' -60.9 NC_001798.1 + 104417 0.66 0.708859
Target:  5'- -aGGagCCGCCGaAGCACGGCCaggGCCGu -3'
miRNA:   3'- ugCCg-GGUGGUgUUGUGCCGGg--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 103712 0.67 0.620029
Target:  5'- -gGGCCCGCCGuuguUGCGuGUCCGCCGa -3'
miRNA:   3'- ugCCGGGUGGUguu-GUGC-CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 103374 0.79 0.119516
Target:  5'- aACGGCCCccgagggucguugACCACGGCGagcaccCGGCCCACCu -3'
miRNA:   3'- -UGCCGGG-------------UGGUGUUGU------GCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 102903 0.66 0.699126
Target:  5'- cCGGCCUGCCGCcGCcgcuCGGCCaCAaggcuCCAg -3'
miRNA:   3'- uGCCGGGUGGUGuUGu---GCCGG-GU-----GGU- -5'
5327 3' -60.9 NC_001798.1 + 102402 0.69 0.503303
Target:  5'- gAUGGCCC-CCAcCAGCGCGGCgaucugggCCuCCAg -3'
miRNA:   3'- -UGCCGGGuGGU-GUUGUGCCG--------GGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 102189 0.71 0.422337
Target:  5'- -gGGCCCggaaGCCugGcGCGCGGCgCGCCGg -3'
miRNA:   3'- ugCCGGG----UGGugU-UGUGCCGgGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 102078 0.66 0.708859
Target:  5'- -gGGcCCCACCGgcgGAUACGGCCCGu-- -3'
miRNA:   3'- ugCC-GGGUGGUg--UUGUGCCGGGUggu -5'
5327 3' -60.9 NC_001798.1 + 100872 0.69 0.512729
Target:  5'- cUGGCCgGCCugGuCGCGGCCUucuucGCCu -3'
miRNA:   3'- uGCCGGgUGGugUuGUGCCGGG-----UGGu -5'
5327 3' -60.9 NC_001798.1 + 99497 0.66 0.699126
Target:  5'- cGCGaCCuCACCACGAa--GGCCCggGCCAc -3'
miRNA:   3'- -UGCcGG-GUGGUGUUgugCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 98791 0.66 0.708859
Target:  5'- cCGGCCaCGCCAgCuGCGCGcGCaCCugCGg -3'
miRNA:   3'- uGCCGG-GUGGU-GuUGUGC-CG-GGugGU- -5'
5327 3' -60.9 NC_001798.1 + 98743 0.66 0.669643
Target:  5'- aGCGGCCCGagGCGACcCcGCCCcCCGa -3'
miRNA:   3'- -UGCCGGGUggUGUUGuGcCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 98594 0.74 0.267437
Target:  5'- gGCGGCCC-CgGCGGCcccgGCGGCCCcCCGc -3'
miRNA:   3'- -UGCCGGGuGgUGUUG----UGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 98494 0.67 0.629964
Target:  5'- aGCGGgCgGCgggaGCGACGCgcccccguaGGCCCGCCAu -3'
miRNA:   3'- -UGCCgGgUGg---UGUUGUG---------CCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 97622 0.74 0.286429
Target:  5'- -gGGCgaCAUCGCGACGCGGgCCGCCGc -3'
miRNA:   3'- ugCCGg-GUGGUGUUGUGCCgGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 96990 0.73 0.306467
Target:  5'- gGCGGCgggGCCAgGGC-CGGCCCGCCGc -3'
miRNA:   3'- -UGCCGgg-UGGUgUUGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 96076 0.69 0.503303
Target:  5'- -gGGCCCGCCGCcGCAUcaguccgcgcggGGCgCGCCu -3'
miRNA:   3'- ugCCGGGUGGUGuUGUG------------CCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 96001 0.69 0.484685
Target:  5'- -aGGCCCcgacuCCGCGAauCACGGCaCACCGg -3'
miRNA:   3'- ugCCGGGu----GGUGUU--GUGCCGgGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.