miRNA display CGI


Results 121 - 140 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 95561 0.68 0.590306
Target:  5'- cGCGGCCCuggagguggcCCACGAgGCggaGGCCCuggucaGCCAg -3'
miRNA:   3'- -UGCCGGGu---------GGUGUUgUG---CCGGG------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 95110 0.68 0.538523
Target:  5'- uGCGGCCCgugaugGCCGCGcgcccgauggucguGCugGGCCuCAgCAu -3'
miRNA:   3'- -UGCCGGG------UGGUGU--------------UGugCCGG-GUgGU- -5'
5327 3' -60.9 NC_001798.1 + 94988 0.66 0.69815
Target:  5'- gGCGGCggCCGCCugggccccgcaggGCGGCGCGGgCCUggagGCCGg -3'
miRNA:   3'- -UGCCG--GGUGG-------------UGUUGUGCC-GGG----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 94568 0.67 0.64983
Target:  5'- -aGG-CCGCCAaGGCGCGGgUCGCCAg -3'
miRNA:   3'- ugCCgGGUGGUgUUGUGCCgGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 94437 0.7 0.466402
Target:  5'- aACGGCCgGCCAg---ACGGCCCccGCCGa -3'
miRNA:   3'- -UGCCGGgUGGUguugUGCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 94226 0.67 0.609112
Target:  5'- gGCGGUCCaaccucgccguguACCAgGACcUGGCCCugaGCCAg -3'
miRNA:   3'- -UGCCGGG-------------UGGUgUUGuGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 93762 0.7 0.457395
Target:  5'- -gGGCCCGCCACcccaaguuCGCGaGCgCCGCCc -3'
miRNA:   3'- ugCCGGGUGGUGuu------GUGC-CG-GGUGGu -5'
5327 3' -60.9 NC_001798.1 + 93385 0.66 0.67951
Target:  5'- gGCGGaCCCcaaggACCACAGCAa-GCCCuCCu -3'
miRNA:   3'- -UGCC-GGG-----UGGUGUUGUgcCGGGuGGu -5'
5327 3' -60.9 NC_001798.1 + 93238 0.67 0.6399
Target:  5'- gUGGCCCcugcuugaggGCCAgGAaacgccCGCGGCCCGCg- -3'
miRNA:   3'- uGCCGGG----------UGGUgUU------GUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 93031 0.7 0.448483
Target:  5'- cGCGGCCCuccccGCCgACAuuacguuCACGGCCUucgagGCCAg -3'
miRNA:   3'- -UGCCGGG-----UGG-UGUu------GUGCCGGG-----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 92984 0.66 0.659747
Target:  5'- gUGGCCCG-CGCGGC-C-GCCCACCu -3'
miRNA:   3'- uGCCGGGUgGUGUUGuGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 92942 0.72 0.342212
Target:  5'- -gGGCCCGCCGC--CGUGGCCCugCGu -3'
miRNA:   3'- ugCCGGGUGGUGuuGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 92530 0.71 0.397128
Target:  5'- -aGGCCC-CCAaccuGACGCGGCUCugCGa -3'
miRNA:   3'- ugCCGGGuGGUg---UUGUGCCGGGugGU- -5'
5327 3' -60.9 NC_001798.1 + 92499 0.66 0.67951
Target:  5'- cACGGCggCCGCCACc---UGGCCC-CCAg -3'
miRNA:   3'- -UGCCG--GGUGGUGuuguGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 91602 0.71 0.405423
Target:  5'- uCGGCCCggcagGCCGCGcuuauGgGCGGCCgGCCGc -3'
miRNA:   3'- uGCCGGG-----UGGUGU-----UgUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 89099 0.66 0.683447
Target:  5'- uCGGCCCcCCACcuCGaucuccagguaguccCGGUCCGCCu -3'
miRNA:   3'- uGCCGGGuGGUGuuGU---------------GCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 87731 0.68 0.560839
Target:  5'- cCGGCCC-CCGcCGGCccgaaccccGCGGCCCugaGCCGc -3'
miRNA:   3'- uGCCGGGuGGU-GUUG---------UGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 87474 0.73 0.292991
Target:  5'- uCGGCCCACCuGCAcuAC-CGGCUCAUCGa -3'
miRNA:   3'- uGCCGGGUGG-UGU--UGuGCCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 87297 0.66 0.67951
Target:  5'- cUGGCCgacCGCCACAGCACccCCCuCCAg -3'
miRNA:   3'- uGCCGG---GUGGUGUUGUGccGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 86850 0.68 0.594258
Target:  5'- -gGGCCCgGCCGCGACaagacccgGCGGCggucgcgcuuuuccgCCGCCGg -3'
miRNA:   3'- ugCCGGG-UGGUGUUG--------UGCCG---------------GGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.