Results 41 - 60 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 3' | -60.9 | NC_001798.1 | + | 58597 | 0.66 | 0.71853 |
Target: 5'- cACGGCCgggugacuCGCCAUG--GCGGCCgCGCCc -3' miRNA: 3'- -UGCCGG--------GUGGUGUugUGCCGG-GUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 37378 | 0.66 | 0.71853 |
Target: 5'- -gGGCUaCACCGCcguCGCGGCCacgggCACCGu -3' miRNA: 3'- ugCCGG-GUGGUGuu-GUGCCGG-----GUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 14585 | 0.66 | 0.71853 |
Target: 5'- aAC-GCCCuguACCACAccccccaguACGCGGgCCGCCu -3' miRNA: 3'- -UGcCGGG---UGGUGU---------UGUGCCgGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 132227 | 0.66 | 0.71853 |
Target: 5'- cGCGGCUa--C-CGACGCGGCC-GCCAg -3' miRNA: 3'- -UGCCGGgugGuGUUGUGCCGGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 68636 | 0.66 | 0.71853 |
Target: 5'- cGCGgacGCCCGCCGCGcCGCGGUCaGCgAg -3' miRNA: 3'- -UGC---CGGGUGGUGUuGUGCCGGgUGgU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 102078 | 0.66 | 0.708859 |
Target: 5'- -gGGcCCCACCGgcgGAUACGGCCCGu-- -3' miRNA: 3'- ugCC-GGGUGGUg--UUGUGCCGGGUggu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 72231 | 0.66 | 0.708859 |
Target: 5'- -gGGCCguCgaGCAGCuGCGGCCCGCg- -3' miRNA: 3'- ugCCGGguGg-UGUUG-UGCCGGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 94988 | 0.66 | 0.69815 |
Target: 5'- gGCGGCggCCGCCugggccccgcaggGCGGCGCGGgCCUggagGCCGg -3' miRNA: 3'- -UGCCG--GGUGG-------------UGUUGUGCC-GGG----UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 22361 | 0.66 | 0.699126 |
Target: 5'- -gGGgCCGCgCAUAAUGCGGuUCCACCu -3' miRNA: 3'- ugCCgGGUG-GUGUUGUGCC-GGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 32027 | 0.66 | 0.699126 |
Target: 5'- uCGGgCgACCGCGGcCACGGgCCGCUc -3' miRNA: 3'- uGCCgGgUGGUGUU-GUGCCgGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 1700 | 0.66 | 0.699126 |
Target: 5'- cCGGCCCGa-AC-ACGCGGCCggagGCCAg -3' miRNA: 3'- uGCCGGGUggUGuUGUGCCGGg---UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 23595 | 0.66 | 0.699126 |
Target: 5'- cCGaGCCCGCC-CAGgGcCGaGCCCGCCn -3' miRNA: 3'- uGC-CGGGUGGuGUUgU-GC-CGGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 99497 | 0.66 | 0.699126 |
Target: 5'- cGCGaCCuCACCACGAa--GGCCCggGCCAc -3' miRNA: 3'- -UGCcGG-GUGGUGUUgugCCGGG--UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 102903 | 0.66 | 0.699126 |
Target: 5'- cCGGCCUGCCGCcGCcgcuCGGCCaCAaggcuCCAg -3' miRNA: 3'- uGCCGGGUGGUGuUGu---GCCGG-GU-----GGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 126894 | 0.66 | 0.703026 |
Target: 5'- gACGGCCCuccACCACugcuucacagaccuGGCGCGcGCCgugguguuccugaaCACCAg -3' miRNA: 3'- -UGCCGGG---UGGUG--------------UUGUGC-CGG--------------GUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 22964 | 0.66 | 0.705945 |
Target: 5'- gGCGGCCCcggcguccggggagGCCGuCGACGa-GCCUGCCGc -3' miRNA: 3'- -UGCCGGG--------------UGGU-GUUGUgcCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 104417 | 0.66 | 0.708859 |
Target: 5'- -aGGagCCGCCGaAGCACGGCCaggGCCGu -3' miRNA: 3'- ugCCg-GGUGGUgUUGUGCCGGg--UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 1515 | 0.66 | 0.708859 |
Target: 5'- gGCGGCCCggccguccagcGCCGgGAgCACGGCgCGgCGg -3' miRNA: 3'- -UGCCGGG-----------UGGUgUU-GUGCCGgGUgGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 4111 | 0.66 | 0.708859 |
Target: 5'- uCGGCCCugggcgggcucgGCCGgGGCGCcGCCC-CCGg -3' miRNA: 3'- uGCCGGG------------UGGUgUUGUGcCGGGuGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 24478 | 0.66 | 0.708859 |
Target: 5'- cGCcGCCCuggggcGCCugAGCGcCGcGCCCGCCu -3' miRNA: 3'- -UGcCGGG------UGGugUUGU-GC-CGGGUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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