miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 58597 0.66 0.71853
Target:  5'- cACGGCCgggugacuCGCCAUG--GCGGCCgCGCCc -3'
miRNA:   3'- -UGCCGG--------GUGGUGUugUGCCGG-GUGGu -5'
5327 3' -60.9 NC_001798.1 + 37378 0.66 0.71853
Target:  5'- -gGGCUaCACCGCcguCGCGGCCacgggCACCGu -3'
miRNA:   3'- ugCCGG-GUGGUGuu-GUGCCGG-----GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 14585 0.66 0.71853
Target:  5'- aAC-GCCCuguACCACAccccccaguACGCGGgCCGCCu -3'
miRNA:   3'- -UGcCGGG---UGGUGU---------UGUGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 132227 0.66 0.71853
Target:  5'- cGCGGCUa--C-CGACGCGGCC-GCCAg -3'
miRNA:   3'- -UGCCGGgugGuGUUGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 68636 0.66 0.71853
Target:  5'- cGCGgacGCCCGCCGCGcCGCGGUCaGCgAg -3'
miRNA:   3'- -UGC---CGGGUGGUGUuGUGCCGGgUGgU- -5'
5327 3' -60.9 NC_001798.1 + 102078 0.66 0.708859
Target:  5'- -gGGcCCCACCGgcgGAUACGGCCCGu-- -3'
miRNA:   3'- ugCC-GGGUGGUg--UUGUGCCGGGUggu -5'
5327 3' -60.9 NC_001798.1 + 72231 0.66 0.708859
Target:  5'- -gGGCCguCgaGCAGCuGCGGCCCGCg- -3'
miRNA:   3'- ugCCGGguGg-UGUUG-UGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 94988 0.66 0.69815
Target:  5'- gGCGGCggCCGCCugggccccgcaggGCGGCGCGGgCCUggagGCCGg -3'
miRNA:   3'- -UGCCG--GGUGG-------------UGUUGUGCC-GGG----UGGU- -5'
5327 3' -60.9 NC_001798.1 + 22361 0.66 0.699126
Target:  5'- -gGGgCCGCgCAUAAUGCGGuUCCACCu -3'
miRNA:   3'- ugCCgGGUG-GUGUUGUGCC-GGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 32027 0.66 0.699126
Target:  5'- uCGGgCgACCGCGGcCACGGgCCGCUc -3'
miRNA:   3'- uGCCgGgUGGUGUU-GUGCCgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 1700 0.66 0.699126
Target:  5'- cCGGCCCGa-AC-ACGCGGCCggagGCCAg -3'
miRNA:   3'- uGCCGGGUggUGuUGUGCCGGg---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 23595 0.66 0.699126
Target:  5'- cCGaGCCCGCC-CAGgGcCGaGCCCGCCn -3'
miRNA:   3'- uGC-CGGGUGGuGUUgU-GC-CGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 99497 0.66 0.699126
Target:  5'- cGCGaCCuCACCACGAa--GGCCCggGCCAc -3'
miRNA:   3'- -UGCcGG-GUGGUGUUgugCCGGG--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 102903 0.66 0.699126
Target:  5'- cCGGCCUGCCGCcGCcgcuCGGCCaCAaggcuCCAg -3'
miRNA:   3'- uGCCGGGUGGUGuUGu---GCCGG-GU-----GGU- -5'
5327 3' -60.9 NC_001798.1 + 126894 0.66 0.703026
Target:  5'- gACGGCCCuccACCACugcuucacagaccuGGCGCGcGCCgugguguuccugaaCACCAg -3'
miRNA:   3'- -UGCCGGG---UGGUG--------------UUGUGC-CGG--------------GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 22964 0.66 0.705945
Target:  5'- gGCGGCCCcggcguccggggagGCCGuCGACGa-GCCUGCCGc -3'
miRNA:   3'- -UGCCGGG--------------UGGU-GUUGUgcCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 104417 0.66 0.708859
Target:  5'- -aGGagCCGCCGaAGCACGGCCaggGCCGu -3'
miRNA:   3'- ugCCg-GGUGGUgUUGUGCCGGg--UGGU- -5'
5327 3' -60.9 NC_001798.1 + 1515 0.66 0.708859
Target:  5'- gGCGGCCCggccguccagcGCCGgGAgCACGGCgCGgCGg -3'
miRNA:   3'- -UGCCGGG-----------UGGUgUU-GUGCCGgGUgGU- -5'
5327 3' -60.9 NC_001798.1 + 4111 0.66 0.708859
Target:  5'- uCGGCCCugggcgggcucgGCCGgGGCGCcGCCC-CCGg -3'
miRNA:   3'- uGCCGGG------------UGGUgUUGUGcCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 24478 0.66 0.708859
Target:  5'- cGCcGCCCuggggcGCCugAGCGcCGcGCCCGCCu -3'
miRNA:   3'- -UGcCGGG------UGGugUUGU-GC-CGGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.