miRNA display CGI


Results 101 - 120 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 71996 0.66 0.67951
Target:  5'- -aGGgCCACgUGCAACGCuGCCUACCu -3'
miRNA:   3'- ugCCgGGUG-GUGUUGUGcCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 51180 0.66 0.67951
Target:  5'- -aGGCCCggGCgGCGGCGCcccCCCGCCGg -3'
miRNA:   3'- ugCCGGG--UGgUGUUGUGcc-GGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 1747 0.66 0.67951
Target:  5'- cGCGccGCCgGCCAgcGCACGGCgCACUg -3'
miRNA:   3'- -UGC--CGGgUGGUguUGUGCCGgGUGGu -5'
5327 3' -60.9 NC_001798.1 + 149985 0.66 0.678525
Target:  5'- cGCGGCgCCcgcggacGCCGgGGCgaGCGGCCCgugGCCGc -3'
miRNA:   3'- -UGCCG-GG-------UGGUgUUG--UGCCGGG---UGGU- -5'
5327 3' -60.9 NC_001798.1 + 32366 0.66 0.677539
Target:  5'- gGCGGCCCcgagcccggggcCCGCGACcCGGCgCCcgGCCu -3'
miRNA:   3'- -UGCCGGGu-----------GGUGUUGuGCCG-GG--UGGu -5'
5327 3' -60.9 NC_001798.1 + 24569 0.66 0.67951
Target:  5'- gGCGGCCgGCgCGCGGagGCGGgCCGCg- -3'
miRNA:   3'- -UGCCGGgUG-GUGUUg-UGCCgGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 153032 0.66 0.67951
Target:  5'- -gGGCCCGCgCgGCGgcGCGCGGUUgGCCGg -3'
miRNA:   3'- ugCCGGGUG-G-UGU--UGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 51906 0.66 0.68934
Target:  5'- cGCGaGCCuCACgGCGuuGCGGCCCguggggGCCGc -3'
miRNA:   3'- -UGC-CGG-GUGgUGUugUGCCGGG------UGGU- -5'
5327 3' -60.9 NC_001798.1 + 47659 0.66 0.68934
Target:  5'- gACGacuUCCGCCGCGGCGCuGGCCCGa-- -3'
miRNA:   3'- -UGCc--GGGUGGUGUUGUG-CCGGGUggu -5'
5327 3' -60.9 NC_001798.1 + 5331 0.66 0.68934
Target:  5'- --cGCCCccagguggaACCGCAuuauGCGCGGCcCCGCCc -3'
miRNA:   3'- ugcCGGG---------UGGUGU----UGUGCCG-GGUGGu -5'
5327 3' -60.9 NC_001798.1 + 105079 0.66 0.68934
Target:  5'- gACGaaCCCGCgGCccCGCGGCCCGCg- -3'
miRNA:   3'- -UGCc-GGGUGgUGuuGUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 52600 0.66 0.68934
Target:  5'- gUGGCCCugGCCGCGuuugACggcgggucgACGGCCC-CCGa -3'
miRNA:   3'- uGCCGGG--UGGUGU----UG---------UGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 26303 0.66 0.68934
Target:  5'- -gGGCgCGCCGCu--GCGGCCCGuCUAc -3'
miRNA:   3'- ugCCGgGUGGUGuugUGCCGGGU-GGU- -5'
5327 3' -60.9 NC_001798.1 + 26201 0.66 0.68934
Target:  5'- cCGGgCCGCCGCcucgGGCGCGGgCgaCGCCAu -3'
miRNA:   3'- uGCCgGGUGGUG----UUGUGCCgG--GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 22319 0.66 0.68934
Target:  5'- aACGGgCCGCCGCcacgGACGCGGaCgCGCgGg -3'
miRNA:   3'- -UGCCgGGUGGUG----UUGUGCC-GgGUGgU- -5'
5327 3' -60.9 NC_001798.1 + 152422 0.66 0.68934
Target:  5'- uGCGGCCCgACCGucACACGgGgCUGCCu -3'
miRNA:   3'- -UGCCGGG-UGGUguUGUGC-CgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 133651 0.66 0.68934
Target:  5'- gAC-GCCCACCGCAucgacCACaGcGCCUGCCGg -3'
miRNA:   3'- -UGcCGGGUGGUGUu----GUG-C-CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 26424 0.66 0.687378
Target:  5'- gACGcGCCCccgcuggugcugcGCgACGACGCggacgcgGGCCCGCCc -3'
miRNA:   3'- -UGC-CGGG-------------UGgUGUUGUG-------CCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 23719 0.66 0.686395
Target:  5'- gGCGGCCCcgGCgGgucgagcuggacgcCGACGCGGCCU-CCGg -3'
miRNA:   3'- -UGCCGGG--UGgU--------------GUUGUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 89099 0.66 0.683447
Target:  5'- uCGGCCCcCCACcuCGaucuccagguaguccCGGUCCGCCu -3'
miRNA:   3'- uGCCGGGuGGUGuuGU---------------GCCGGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.