miRNA display CGI


Results 121 - 140 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5327 3' -60.9 NC_001798.1 + 86161 0.66 0.669643
Target:  5'- -gGGCgCGCaugCGCGACGCGGcCCCGCg- -3'
miRNA:   3'- ugCCGgGUG---GUGUUGUGCC-GGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 33938 0.66 0.669643
Target:  5'- cGCGuGCCUACCuuucccuaGCGGCccCGGCCC-CCGg -3'
miRNA:   3'- -UGC-CGGGUGG--------UGUUGu-GCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 87297 0.66 0.67951
Target:  5'- cUGGCCgacCGCCACAGCACccCCCuCCAg -3'
miRNA:   3'- uGCCGG---GUGGUGUUGUGccGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 9032 0.66 0.67951
Target:  5'- cACcGCCCcCCGCAgccagcGCACGGCgaGCCAg -3'
miRNA:   3'- -UGcCGGGuGGUGU------UGUGCCGggUGGU- -5'
5327 3' -60.9 NC_001798.1 + 45176 0.66 0.67951
Target:  5'- -gGGCuCCACCAuCGACGgGGCCgUugCGg -3'
miRNA:   3'- ugCCG-GGUGGU-GUUGUgCCGG-GugGU- -5'
5327 3' -60.9 NC_001798.1 + 26303 0.66 0.68934
Target:  5'- -gGGCgCGCCGCu--GCGGCCCGuCUAc -3'
miRNA:   3'- ugCCGgGUGGUGuugUGCCGGGU-GGU- -5'
5327 3' -60.9 NC_001798.1 + 26201 0.66 0.68934
Target:  5'- cCGGgCCGCCGCcucgGGCGCGGgCgaCGCCAu -3'
miRNA:   3'- uGCCgGGUGGUG----UUGUGCCgG--GUGGU- -5'
5327 3' -60.9 NC_001798.1 + 22319 0.66 0.68934
Target:  5'- aACGGgCCGCCGCcacgGACGCGGaCgCGCgGg -3'
miRNA:   3'- -UGCCgGGUGGUG----UUGUGCC-GgGUGgU- -5'
5327 3' -60.9 NC_001798.1 + 152422 0.66 0.68934
Target:  5'- uGCGGCCCgACCGucACACGgGgCUGCCu -3'
miRNA:   3'- -UGCCGGG-UGGUguUGUGC-CgGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 133651 0.66 0.68934
Target:  5'- gAC-GCCCACCGCAucgacCACaGcGCCUGCCGg -3'
miRNA:   3'- -UGcCGGGUGGUGUu----GUG-C-CGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 26424 0.66 0.687378
Target:  5'- gACGcGCCCccgcuggugcugcGCgACGACGCggacgcgGGCCCGCCc -3'
miRNA:   3'- -UGC-CGGG-------------UGgUGUUGUG-------CCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 23719 0.66 0.686395
Target:  5'- gGCGGCCCcgGCgGgucgagcuggacgcCGACGCGGCCU-CCGg -3'
miRNA:   3'- -UGCCGGG--UGgU--------------GUUGUGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 89099 0.66 0.683447
Target:  5'- uCGGCCCcCCACcuCGaucuccagguaguccCGGUCCGCCu -3'
miRNA:   3'- uGCCGGGuGGUGuuGU---------------GCCGGGUGGu -5'
5327 3' -60.9 NC_001798.1 + 153032 0.66 0.67951
Target:  5'- -gGGCCCGCgCgGCGgcGCGCGGUUgGCCGg -3'
miRNA:   3'- ugCCGGGUG-G-UGU--UGUGCCGGgUGGU- -5'
5327 3' -60.9 NC_001798.1 + 24569 0.66 0.67951
Target:  5'- gGCGGCCgGCgCGCGGagGCGGgCCGCg- -3'
miRNA:   3'- -UGCCGGgUG-GUGUUg-UGCCgGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 4052 0.66 0.67951
Target:  5'- -gGGCCCgGCgGCGcuccAgGCGGCCCGCg- -3'
miRNA:   3'- ugCCGGG-UGgUGU----UgUGCCGGGUGgu -5'
5327 3' -60.9 NC_001798.1 + 114093 0.66 0.67951
Target:  5'- cCGGUaCGCCGCGGCcaucCuGCCCACCGg -3'
miRNA:   3'- uGCCGgGUGGUGUUGu---GcCGGGUGGU- -5'
5327 3' -60.9 NC_001798.1 + 93385 0.66 0.67951
Target:  5'- gGCGGaCCCcaaggACCACAGCAa-GCCCuCCu -3'
miRNA:   3'- -UGCC-GGG-----UGGUGUUGUgcCGGGuGGu -5'
5327 3' -60.9 NC_001798.1 + 92499 0.66 0.67951
Target:  5'- cACGGCggCCGCCACc---UGGCCC-CCAg -3'
miRNA:   3'- -UGCCG--GGUGGUGuuguGCCGGGuGGU- -5'
5327 3' -60.9 NC_001798.1 + 53324 0.66 0.67951
Target:  5'- gGCGGCgcggCACCAUAACACcGUCC-CCGa -3'
miRNA:   3'- -UGCCGg---GUGGUGUUGUGcCGGGuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.