Results 1 - 20 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5327 | 3' | -60.9 | NC_001798.1 | + | 154085 | 0.73 | 0.292991 |
Target: 5'- cACGGCUggagCGCCGgGGCGCGGCCggCGCCGg -3' miRNA: 3'- -UGCCGG----GUGGUgUUGUGCCGG--GUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 153372 | 0.68 | 0.560839 |
Target: 5'- uCGG-CCGCCGCcACGCGGCgCCggaACCGg -3' miRNA: 3'- uGCCgGGUGGUGuUGUGCCG-GG---UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 153346 | 0.66 | 0.71853 |
Target: 5'- gACGGgCCGCaGCGGCGCG-CCCAggccCCAg -3' miRNA: 3'- -UGCCgGGUGgUGUUGUGCcGGGU----GGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 153226 | 0.69 | 0.493954 |
Target: 5'- gACGGCCCGggcCCGCGGCGgCGGaggaCCCGCg- -3' miRNA: 3'- -UGCCGGGU---GGUGUUGU-GCC----GGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 153032 | 0.66 | 0.67951 |
Target: 5'- -gGGCCCGCgCgGCGgcGCGCGGUUgGCCGg -3' miRNA: 3'- ugCCGGGUG-G-UGU--UGUGCCGGgUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 152642 | 0.68 | 0.580447 |
Target: 5'- cCGGCgCC-CCGcCGGCGCGGCCCugagugguGCCc -3' miRNA: 3'- uGCCG-GGuGGU-GUUGUGCCGGG--------UGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 152422 | 0.66 | 0.68934 |
Target: 5'- uGCGGCCCgACCGucACACGgGgCUGCCu -3' miRNA: 3'- -UGCCGGG-UGGUguUGUGC-CgGGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 151273 | 0.67 | 0.6399 |
Target: 5'- cCGGCCCG-CACGGCcgccuCGGCCU-CCAc -3' miRNA: 3'- uGCCGGGUgGUGUUGu----GCCGGGuGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 150797 | 0.66 | 0.659747 |
Target: 5'- ---cCCCGcCCGCAACGgGGCgCCGCCGc -3' miRNA: 3'- ugccGGGU-GGUGUUGUgCCG-GGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 150562 | 0.67 | 0.620029 |
Target: 5'- aGCGGCCCGgggcCCGCGGgGCGGCgCGg-- -3' miRNA: 3'- -UGCCGGGU----GGUGUUgUGCCGgGUggu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 150462 | 0.68 | 0.551102 |
Target: 5'- gACGGCCgCGCgGgGgcGCGCGGCgCGCCc -3' miRNA: 3'- -UGCCGG-GUGgUgU--UGUGCCGgGUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 150358 | 0.69 | 0.484685 |
Target: 5'- uGCGcGUCCACCggcacggcggGCGGCGCGGgCCCgGCCGc -3' miRNA: 3'- -UGC-CGGGUGG----------UGUUGUGCC-GGG-UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 150047 | 0.71 | 0.405423 |
Target: 5'- -gGGCCCGgCGCGGCGCcgcccucuuGGCCC-CCAc -3' miRNA: 3'- ugCCGGGUgGUGUUGUG---------CCGGGuGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 149985 | 0.66 | 0.678525 |
Target: 5'- cGCGGCgCCcgcggacGCCGgGGCgaGCGGCCCgugGCCGc -3' miRNA: 3'- -UGCCG-GG-------UGGUgUUG--UGCCGGG---UGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 149463 | 0.73 | 0.309219 |
Target: 5'- gGCGGCuCCAcgcgggggccgcggcCCGCAGCA-GGUCCGCCAc -3' miRNA: 3'- -UGCCG-GGU---------------GGUGUUGUgCCGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 149324 | 0.69 | 0.522226 |
Target: 5'- aGCGcGCCCACCAgggugcccugguCAaagaGCAUGuuGCCCACCGg -3' miRNA: 3'- -UGC-CGGGUGGU------------GU----UGUGC--CGGGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 146634 | 0.67 | 0.6399 |
Target: 5'- -aGGCCC-CCGCgGGCauccgGCGGCCgGCCc -3' miRNA: 3'- ugCCGGGuGGUG-UUG-----UGCCGGgUGGu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 146593 | 0.72 | 0.372909 |
Target: 5'- gACGGgCCGCgGCGccaGCGGCCCACg- -3' miRNA: 3'- -UGCCgGGUGgUGUug-UGCCGGGUGgu -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 145733 | 0.68 | 0.541418 |
Target: 5'- cCGGCCCgcgccccgccGCCACAccCACGGCacccccccCCGCCGc -3' miRNA: 3'- uGCCGGG----------UGGUGUu-GUGCCG--------GGUGGU- -5' |
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5327 | 3' | -60.9 | NC_001798.1 | + | 144283 | 0.67 | 0.6399 |
Target: 5'- aAC-GCgCGCCGaAACGCGGCCCAguCCAg -3' miRNA: 3'- -UGcCGgGUGGUgUUGUGCCGGGU--GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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